KEGG   Brassica napus (rape): 106390274
Entry
106390274         CDS       T04128                                 
Name
(RefSeq) lysine-specific demethylase 5B isoform X3
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
bna  Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:bna00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:bna01009]
    106390274
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bna03036]
    106390274
Enzymes [BR:bna01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     106390274
Protein phosphatases and associated proteins [BR:bna01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     106390274
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    106390274
SSDB
Motif
Pfam: JmjC PLU-1 JmjN zf-C5HC2 ARID PHD KDM5_C-hel
Other DBs
NCBI-GeneID: 106390274
NCBI-ProteinID: XP_013686151
LinkDB
Position
C9:complement(11077888..11086058)
AA seq 1464 aa
MCLVMGKGRAKAVEKRVLDQKLRGSLNVPSGPVYYPTEDEFKDPLDYIHKIKPEAEAYGI
CKIVPPSSWKPPFGLDLESVKFPTKTQEIHRLQFRPASCNSKTFQLEYSRFVEEHLGKKL
KKRVVFEGDDLDLCKLFNAVKRFGGYDKVVKGKKWGEVYQFMSSGEKISKCAKHVLCQLY
KEHLHDFEKYHSLMNADPAKGCKRNRRCSEFSSSKRRKIKADVKNPKVENEGEVDQACEQ
CKSDTHGEVMLLCDSCNKGWHIYCLSPPLNHIPPGNWYCLDCLNTDEDTFGFVPGKCLLL
EDFKRIADRAKRKWFGAGPVSRTQIEKKFWEIVEGSGGEVEVMYGNDLDTSVYGSGFPRI
GDKRPESVEANVWEEYCRSPWNLNNMPKLKGSMLQAIRHNINGVTVPWLYLGMLFSSFCW
HFEDHCFYSVNYHHWGEAKCWYGVPGSAASAFEKVMRKTLPDLFDAQPDLLFQLVTMLSP
TVLQENKVPVYTVLQEPGNFVITFPKSFHAGFNFGLNCAEAVNFATADWLPYGGSGAELY
RLYRKPAVISHEELLCVVAKANCYDGKGSIHLKKELLRIYSKEKTWREQLWKSGILRSSP
MFLPECPDSVGIEEDTTCIICQQFLHLSAIVCNCRPSVFACLEHWKHLCECEPTKLRLVY
RYTLAELHGMVQEVEKSGDCKTQETKSSQRPSSGTKRSAASNKKQEGMQVCQARPAEDWL
RRASTVLLDVFSSVEYATLLKEAEQFLWGGSEMDHVRDVAKSLIKANIWAEAVDDCLSKV
EGKANNDPEKVHLEFIDELLRVDPVPCFQSGHLKLKDYAEEARKLSEKIDCSLSSSPTIT
QLELLHSEVTSSPISLRKHKILSKKISSAKMLAKRARRYLAASKAPGIELDELFKLKSEI
LELQVTLTETEGILDLLKKSELARDKCSKVLSGSISLKNVEELLHEFDGFISINIPELNI
LRQYHVEALSWISRFNDTMVDVREGKDQQKLISDLSSLLHDGASLGIQVEGLPLVEVELK
KASCREKARTVYAARTSLDFIEQLLSEAVALHIEEEKLFAEISRTLSTARCWEERASSIL
ASETQMYDLKELVRMSVNIDAVLPSLKGIENTISLAETWLQNSEPFLSAASSMPSSPCSL
LELPSLKDLVAQSKSLSVQLQEPRVLETLLLNCERWQCDNHPLLQETEDLLATVKTDDGK
HSTILPKIMDLITRVDSARTSGLSLGLNLEELPKLQTASLKLGWCYKTILLGSSSPSPEL
PEDLGKPSLQKIQQHLEAGQALKLLPEEYRIGKRLVELNDTGQEWAKRARKVVTDSGALA
LEGVFELISEGENLPVIAEEELQSLRARSMLHCVCLKPYNSRSMVSCSQCGEWYHTYCVK
LHWRPEAYVCSACCPVAESSPKIDLPRSMEPKTPSLNHRRARRAVATDAAVGDLQWKSRK
RIQRVAKRSPQVHILPWFFSQEPK
NT seq 4395 nt   +upstreamnt  +downstreamnt
atgtgtttggtaatgggaaaaggtagagctaaggcagtagagaaaagggttttagatcag
aaactcagaggatctctcaatgtcccgtctggacctgtttattacccgaccgaagatgaa
ttcaaagacccgttagattatatacacaagatcaagcctgaggcagaggcttatgggatc
tgcaagatcgttccacctagtagctggaaaccgcctttcggtttggatttggagtctgtc
aagtttccgacaaagacgcaagagattcaccggttgcagttccgtcctgcttcttgcaac
tctaagacgtttcagctggagtacagtaggtttgtggaggagcatttaggtaagaagctg
aagaagagagttgtctttgaaggggatgatttggatctctgtaagctgtttaacgcggtg
aagaggtttgggggttatgataaggttgtcaaggggaaaaaatggggtgaggtttatcag
ttcatgagctctggtgaaaagatctccaagtgcgctaagcatgttctgtgtcagttgtat
aaagagcatttgcatgattttgagaaatatcacagtctgatgaatgcagatccggcaaag
ggttgcaaaaggaatcgacgttgttctgagttctccagctcaaagagaaggaaaataaaa
gctgacgtaaaaaatccaaaggtggaaaacgagggagaggttgatcaagcgtgtgagcag
tgcaaaagtgacacacatggtgaagtgatgctcttgtgcgatagttgtaataaaggttgg
catatatactgtctctcgccgccattgaaccatatcccacctgggaactggtattgcctt
gattgcttgaacactgatgaagacacttttggctttgtgcccggtaaatgcttgctactt
gaagactttaagcggattgctgatcgcgccaaaaggaagtggtttggtgcagggccggtg
tctaggacgcagatcgagaagaagttttgggaaatagtagaagggtcaggtggtgaggtt
gaagttatgtatggtaatgacttggatacttctgtttatgggagtggttttcctagaata
ggcgacaaaagaccagaatcagttgaggcaaatgtttgggaggaatattgccgcagccct
tggaatctcaataacatgcctaagttgaaaggatctatgcttcaggccattcggcataac
atcaatggtgttacagtgccttggctgtatcttggaatgctcttctcttctttttgttgg
cattttgaagaccattgtttttactctgtgaattatcatcactggggagaagcaaaatgt
tggtatggtgttccaggcagtgcggctagtgcttttgaaaaggtcatgcgaaaaacccta
cctgatctctttgatgctcagccagatttgctctttcaactggttactatgttgagtccg
actgtcttacaagaaaacaaagtcccagtctacacagtattacaggagcctggaaacttt
gtgatcacgtttccaaaatccttccatgctggattcaatttcggtttaaactgtgcagag
gccgtcaactttgccactgccgattggctaccttatggtggttctggggcggagctgtat
cgactgtaccgtaaacctgcagtcatatctcatgaagagcttctctgtgtggtagctaag
gcaaactgctacgatggcaaagggtcaatacatttgaagaaagaattgctcagaatatat
agcaaggaaaaaacttggagagagcagctctggaaaagtggtattttgagatcttctcct
atgtttctgcctgaatgccctgattctgtgggcatcgaagaggatacaacatgtatcatc
tgccagcagtttctccatctttctgctatcgtctgcaactgcaggccatccgtttttgca
tgcttggagcactggaagcacctttgtgaatgtgaacctacaaaactgcgcctggtatat
cgttatacccttgccgagttgcatggaatggttcaagaagttgaaaagtctggtgactgc
aaaactcaagaaaccaaaagttcacaacggccaagttcaggcaccaaacgatcagctgct
tctaacaaaaagcaggaggggatgcaagtttgccaggcacgaccagctgaagattggctt
cgtcgagcatcaacggttctcctcgatgtcttttccagtgttgaatatgccactcttttg
aaggaagcagaacagtttctttggggtggatcagaaatggaccacgtacgggatgttgca
aaaagtttgatcaaagcaaatatatgggctgaagctgttgacgactgtctttcaaaagtc
gaaggcaaagccaacaatgatccagagaaagttcacttggagttcatcgatgagttgctg
agagttgaccccgttccttgctttcagtctggtcatcttaaattaaaggactatgctgaa
gaggctaggaagttgtctgagaaaatcgattgttctctgtcaagtagcccaacgatcacc
cagctggagctattgcactccgaagtcaccagttcaccaatatccctaagaaaacacaag
atcttgtcaaagaaaatatcttccgcaaagatgttagctaaaagggcgagacgctatctc
gccgcttcaaaggctcctggaattgaattggatgaacttttcaagctaaagtcagagata
ttggagcttcaggtgacacttacagaaacggaagggatcctggatttgctaaagaaatca
gaattagcgcgtgataaatgtagcaaagttttgagtggttctatatctctcaagaatgtg
gaagagttgcttcatgaatttgatgggtttattagcattaacattcctgagctgaatatc
ctgaggcagtaccatgttgaggctttgtcttggatttcacgctttaatgatacaatggtt
gatgttcgtgaaggcaaggaccaacaaaagctgatcagtgacctgagttctcttctccac
gatggagcatccttaggcattcaagttgaagggctccctcttgttgaggttgaactgaag
aaggcatcttgtcgagaaaaagcgcgaacggtttatgctgcaagaacgtctctggatttc
attgagcagctgctctcggaagctgttgcattacatatcgaggaagagaagttatttgct
gagatctccagaactttgtcaacggcgaggtgttgggaggaaagagcaagcagtatcctt
gctagtgaaactcagatgtacgaccttaaagagctcgtaaggatgtctgtcaacatcgat
gctgttttgccctctctgaagggcatagagaacacaatttctttggctgaaacttggctt
cagaactctgagccttttctatctgccgcttcctctatgccgtcatctccgtgttctctg
cttgaacttccttcattaaaggacctggtcgctcagtctaaatcgcttagtgttcaactt
caagagccaagggttcttgaaacattgttgcttaattgcgagaggtggcagtgtgataat
catccgctcttgcaagaaactgaagatttgttggccactgtgaaaacagatgatggcaag
catagcacgattcttccgaagattatggatttaataaccagagtggactccgctagaaca
tctggtctgtcccttggtcttaatttggaagaacttcccaaacttcaaacggcaagttta
aaactaggatggtgttataaaaccatcttgttaggctctagttcaccttcccctgagcta
ccagaagatctaggaaagccctcgttacagaaaattcagcagcacttagaagcgggacaa
gcactgaaactattacctgaagagtatcgcataggcaagagacttgtggagctaaatgac
actggacaagagtgggcaaaacgagctagaaaagtggtgacagactcgggtgctcttgcc
ttggaaggagtattcgagcttatctcggagggtgaaaatttgcctgtcattgcagaggaa
gaacttcagtcattacgagctcgaagtatgttacactgtgtttgcctaaagccatacaac
tcgagatccatggtttcttgtagtcaatgtggtgaatggtatcacacctattgtgttaaa
cttcattggcggcctgaggcttatgtctgctccgcttgctgtccagtggcagaatcctct
ccaaagattgatctccctagatcaatggagccaaagacaccgtcactgaaccatagacgg
gcaaggagggcagtagcgactgatgcagcggttggtgatttgcagtggaaaagccgaaaa
cgcatccaaagggtagctaaacggagtcctcaggttcatatccttccctggtttttctct
caagaaccaaaataa

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