Brassica napus (rape): 106391346
Help
Entry
106391346 CDS
T04128
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106391346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106391346
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106391346
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106391346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
106391346
NCBI-ProteinID:
XP_013687421
LinkDB
All DBs
Position
C9:56022876..56028263
Genome browser
AA seq
836 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDSDNVNQKEKFEADLKKEIKKLQRY
RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ
PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSISRH
KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV
EGLEDLVTAGPLVKGTPLSMKSSLAAPVPAPQVRSISLPDDATITDGISETLPKTPPAKN
GASLHSAPSTPVGGRSSLNVPVSSVPNAPVVLSTSIPVQTSTESMGSLSPVAAKEEDATT
LSSRKPPSSVVDAPLRGIGRVSIPNQPQPSQPLSLSPATGARISATSAAEVAKRNIMAVE
SNVQPLSSPSKMVLPPAAKGNDGTASDSNPGDVAASISRAYSPSIVSGSQWRPGSPFQSQ
NETVRGRTEIAPDQREKFLQRYQQVHHGNLLGMPSLSGGNEMQFSSQQQNPLLQQSSAMS
PHGSMGLQAPGFSVMSSASLQQPSNAMTQQLGQQPSVADVDHGRNDDQLQQNLPDDSSSL
AASKTVPNEDDSKGLFDTPSGMPSYMLDPVQVTRDGPDFSPGQPIQPGQSSSSLGVIGRR
SNSELGAIGDPSALGPMHDQMHNLQMLEAAYYRLPQPKDSERPRPYTPRNPAITPQTFPQ
TQAPIVNNPLFWERLGSDAYGTETLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWF
QRHKEPKIATDEYEQGAYVYFDFQTPKDESQEGGWVQRIKNEFTFEYSYLEDELAV
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcggaaattacaaggcgagatagatcgggtgctgaagaaggttcaagaa
ggcgttgatgttttcgacagcatctggaacaagtggaatgtatatgattcagataatgta
aaccaaaaggagaagtttgaggcggacttgaagaaggagatcaagaagttgcagcggtac
agggaccagatcaagacttggattcagtctagtgagatcaaagataaaaaagtcagtgca
tcatatgagcagtccctggttgacgctcggaagctcattgagcgagaaatggagaggttt
aagatctgtgagaaagagaccaagacaaaagccttttcaaaggaaggactgggccagcaa
cctaaaactgacccaaaagagaaagcgaagtcagagacaagagattggttgaacaatgtg
gtgagcgaactagagtcacagattgatagctttgaagctgagttggaaggactatctgtc
aaaaaaggaaagacaaggccacccagattgacacatcttgaaacatctatttcaaggcac
aaagatcatataataaagttggaattgattttgaggcttctggacaatgatgaattaagt
ccagaacaagtaaatgatgtcaaagattttctggatgattatgttgaacgaaatcaggat
gattttgacgaattcagtgatgttgacgagctgtatagcacgctgccgcttgatgaggtg
gagggtcttgaagatttagttactgctggcccccttgtcaagggtactcctctgagcatg
aagagttctttggcagcaccagtaccagcacctcaagttcggagcataagtttgccagat
gatgcgactataacggatggcatctctgagacacttccaaaaacccctcccgcaaagaat
ggcgcaagccttcactcagcaccatcaacacccgttgggggacgttcaagtttgaatgtc
cccgtcagtagtgttccaaatgcaccagttgtcttatcaacttctattcctgttcaaact
tccacggaaagcatgggaagtttgtctccagtggctgcaaaggaagaagacgcaacaacc
ttgtcttcccgtaaaccaccctcatctgttgttgatgctccattgaggggcattggtagg
gttagtatccccaaccagccccaaccaagtcagcctctgtctctaagtcctgctactgga
gctcgcattagtgctacttcagcagctgaagttgcaaagaggaatataatggcagttgag
agcaacgtccaacctctaagttctccgagcaaaatggtattgccaccagctgcgaagggt
aatgatggaactgcctctgatagcaaccccggtgatgttgcagcaagtatcagtagagct
tattcaccgtctattgtatctggttcgcagtggaggcctgggagtccctttcagagtcag
aatgaaacggtccgtggaagaactgaaatagcaccagatcaaagagagaaattcttacag
cggtaccagcaagtacaccatgggaacctcttaggcatgccttctctatctggaggaaac
gagatgcagttttcttcacaacagcaaaatcctcttttacagcagagttctgccatgtct
cctcatggtagcatgggacttcaggcaccaggttttagtgtcatgagttctgcctcctta
cagcagccgtcaaatgccatgactcaacaattgggtcagcagccttctgttgcagatgta
gatcatgggagaaatgatgatcagctgcaacaaaacttacctgatgattcatcttcctta
gcagcttcaaaaactgttccgaatgaggatgattctaaaggtctatttgatactccgtcg
ggaatgcccagctacatgttggatcccgtacaggtaactagggacggtcctgatttctct
cctgggcaacccattcaacccggccaatcttcaagtagcctcggtgtcattggacgcaga
agtaactccgaattaggagccattggtgatccttcggctttagggccaatgcatgatcag
atgcacaatctccagatgcttgaagctgcgtactatagacttcctcaacccaaagattca
gaacgtcctagaccctatactccgaggaacccagcaatcacacctcaaacgtttccccaa
acacaagcgccaatcgtaaacaaccctttgttctgggaacgtttaggcagcgatgcttat
ggaacggaaacattgttctttgcattttattatcagcagaactcatatcagcagtatcta
gcggcaaaagagctgaagaaacagtcgtggagataccacagaaagttcaacacatggttt
cagagacacaaggagccaaagattgcaactgatgagtatgaacaaggagcctatgtttac
tttgatttccaaacccccaaagatgagagccaagaaggaggatgggttcaaaggatcaaa
aacgagttcacgtttgaatacagttatcttgaagatgaactcgccgtatag
DBGET
integrated database retrieval system
