Brassica napus (rape): 106391373
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Entry
106391373 CDS
T04128
Name
(RefSeq) DNA mismatch repair protein MSH7-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
bna
Brassica napus (rape)
Pathway
bna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106391373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106391373
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106391373
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
HMG_WDHD1
AAA_29
Motif
Other DBs
NCBI-GeneID:
106391373
NCBI-ProteinID:
XP_013687448
LinkDB
All DBs
Position
C1:34761850..34767824
Genome browser
AA seq
1092 aa
AA seq
DB search
MQRQKSILSFLQKPSQASVPGDATSGGGGLRSAVKERGINSDASRNVSKCVDDDVRGVDT
PPEKVPRRVLPSNFKAAESAGGASSLFSSIMHKFVKVDGSECSGERNVAPIRDSSVSKMP
ESVFPERRSNNAQPQDRDYTFCVDNPRSLEDDDVLGPDTPGTRPSVPRLKRVLEDGVAFT
ENKVSLFDSNKRMKLFGDREKKEVNEGTKFEWLEPSRIRDANRRRPDDPLYDRKTLYIPA
DVFKKMSASQKQYWSVKSEYMDVVLFFKVGKFYELYELDAELGHKELDWKMTMSGVGKCR
QVGISESGIDDAVQKLLARGYKVGRIEQLETSDQAKARGANTIIPRKLVQVLTPSTASEG
NLGPDPVHLLAIKEVKMELEKCSTVYGFAFVDCASLRFWVGSISDDASCAALGALLMQVS
PKEVIYESKGLSRESQQALRKYTLTGSTAVQLNPLPQEMGDANACRVRNMIESSGYFRGS
SESWNSAVDGLTESGIALSALGELISHLSRLKLEDVLKNGDIHPYKVYSGCLRIDGQTMV
NLEIFNNSFDGGPSGTLYKFLDNCVSPTGKRLLRNWICHPLKDIGSINKRLDVVEEFTAN
SEIMQITGQYLHKLPDLERLLGRIKYTVQSSAYLLPALLGKKVLKQRVKSFGQLVKGFRS
GIDLLLAVQKESNMIRLLCKLCKLPILVGKSGLELFLSQFEAAIDSDFPDYQNHDVTEEN
AETLTILIDLFIEKATEWSEVIHTISCLDVLRSFTISASLSAGSMARPVIFPESKSTIQN
QEANGPILKIQGLWHPFAVAADGQLPVPNDLLLGEAGSSSIHPRSLLLTGPNMGGKSTLL
RATCLAVIFAQLGCYVPCQTCELSLVDTIFTRLGASDRIMTGESTFLVECTEAASVLQNA
TQDSLVILDELGRGTSTFDGYAIAYSVFRHMVERVKCRMLFATHYHPLTKEFSSHPRVTL
KHMACAFKSRFDQEPGSCDQDLVFLYRLAEGACPESYGLQVALMAGIPKQVVETASVAAQ
AMKRSIGENFKSSELRSEFSSLHEEWLKTLVGISQVVDDDKAMFEEDVSDMLICLWHEIR
SSCSVAQVKPMR
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccagaaatcgattctgtctttcttgcagaaaccgtcgcaagcttcagttcct
ggcgatgctactagcggcggaggaggtttacgatctgctgtgaaggaaagaggcattaac
agcgacgcttcgcgaaatgtgtcgaaatgtgtggatgatgatgttagaggagtggatact
ccgccggagaaagttcctcgtcgtgtactgccgtctaacttcaaggcggctgaatccgcc
ggtggcgcttcgtctctcttctccagtatcatgcataagtttgtgaaagtcgatggttca
gaatgctctggagagaggaatgttgctccgattcgtgattcatctgtatcgaagatgcct
gagagtgtttttccagaacgtcgttcgaataatgctcaacctcaagatagagactatact
ttttgcgtagataacccaagatcactagaagatgacgatgttcttggcccagatacgccc
gggacgcgtcccagtgttcctcgtttgaagcgagttctggaggatggggtggcttttact
gagaacaaggtctctctatttgattctaacaaacggatgaaactgtttggggatcgagag
aagaaagaagtgaacgaaggcaccaaatttgaatggcttgagccttctcggatcagggat
gccaatagaagacggcctgatgatcccctttacgatagaaagaccctctacataccagct
gacgttttcaagaaaatgtccgcgtcgcagaagcaatactggagtgtcaagagtgagtat
atggatgttgtgcttttctttaaagtgggcaaattttatgagctgtatgagctggatgca
gagttaggtcacaaggagcttgactggaagatgaccatgagcggtgtgggaaaatgcaga
caggttggtatctctgaaagtgggatagatgacgcagtgcaaaagctattagctcgtgga
tataaagttggaagaatcgagcagttagaaacatctgaccaggcaaaagccagaggtgca
aatactataataccgaggaagctagttcaggtattaactccatcaacagcaagcgagggt
aatctagggcctgatcccgtccatctccttgctataaaagaggtgaaaatggagctagaa
aagtgttcaactgtatatggatttgctttcgtcgactgtgcttccttgaggttttgggtt
gggtccatcagtgatgatgcttcatgtgctgctcttggagctttattgatgcaggtttct
ccaaaagaagtgatatatgagagtaaagggctatcaagagagtcccaacaggccctaagg
aaatatacattgacagggtctacggcggtacaattgaatccactaccacaagaaatgggg
gatgcaaatgcttgtagagtgagaaatatgatagaatccagcggatacttcagaggttct
tctgagtcatggaactctgctgttgatggtctaactgaatctggaattgctcttagcgct
cttggagaactaatcagtcatctttctaggctaaagctagaagatgtacttaagaatggg
gatattcatccctacaaagtttacagtggttgtctaagaattgatggccagacgatggta
aatctggagatattcaacaatagctttgatggtggtccttcagggaccttgtacaaattt
cttgataactgtgttagcccgactggtaagcggctgctaaggaattggatctgccatccc
ctcaaagatataggaagtatcaataaaaggcttgatgtagtcgaagaattcacggcaaac
tcagaaattatgcaaatcacaggccagtatctccataaacttccagacttggaaagactg
ctcggacgcattaagtatactgttcagtcatcagcctatcttttgcctgctcttcttggg
aaaaaagtgctgaaacaacgagttaaatcatttgggcagcttgtgaaagggttcagaagt
ggaattgatctgttgttggctgtacagaaggaatcgaatatgattagactgctatgcaag
ctctgtaaacttccaatattagtggggaaaagcgggcttgagttattcctttctcaattt
gaagcagccatagatagtgactttcctgattatcagaaccatgatgtgacagaggagaat
gctgaaactctcacaatactcattgatctatttatagaaaaagccacagagtggtctgag
gtcattcacaccattagctgcctcgatgtcctgagatcctttacaatctctgcaagtctc
tctgctggaagcatggccaggcctgttattttccctgaatcgaaaagtacaattcagaat
caggaagcaaatgggccaatacttaaaatccaagggctatggcatccgtttgcagttgca
gctgatggtcaacttcctgttccaaatgatctactccttggtgaggctggaagcagcagc
attcatcctcggtcgttgttactaacaggaccaaacatgggtggaaaatcaactcttctt
cgtgcaacatgtcttgctgttatctttgcgcagcttggttgttacgtaccttgtcagacg
tgtgaactctctctcgtggatactatcttcacaaggcttggcgcatctgatagaatcatg
acaggagagagcaccttcttggtagaatgcactgaggcggcgtcagttcttcaaaacgca
actcaggattcactagtaatccttgacgaactgggcagaggaactagtactttcgatggc
tacgccattgcatattctgtttttcgtcacatggtagagagagtcaagtgcaggatgctc
tttgcaacgcattaccaccctctcaccaaggagttctcgtcccacccgcgggtcaccttg
aaacacatggcttgcgcattcaaatcaagattcgaccaagaaccaggtagctgcgaccaa
gacttggttttcttgtaccgtctagccgagggagcttgtcctgagagctatgggcttcaa
gtagcactcatggcgggaataccaaagcaagtggttgagacagcatcggtggcggctcaa
gccatgaagagatcgattggagaaaacttcaagtcgagtgagctaaggtctgagttctca
agcctgcatgaagaatggctcaagacattggtgggtatctctcaagtcgtcgacgacgac
aaggctatgtttgaggaggatgtctctgacatgttgatttgcttatggcatgagatcaga
tcttcttgctctgttgcccaagtaaaaccgatgagataa
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