Brassica napus (rape): 106391721
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Entry
106391721 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106391721
03041 Spliceosome [BR:
bna03041
]
106391721
03036 Chromosome and associated proteins [BR:
bna03036
]
106391721
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106391721
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106391721
mRNA cycle factors
Common to processing body (P body) and stress granule
106391721
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106391721
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106391721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106391721
NCBI-ProteinID:
XP_013687875
UniProt:
A0A078FR95
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All DBs
Position
C4:61034385..61037718
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AA seq
612 aa
AA seq
DB search
MSESWADVVDSENNTASGSTTQNSHNTASGSTKPSRPAYVPPHLRNKQPSSDPVPPLPAN
DRVGYNGPPSASRWAPPGGYRADAGRPRGTGGGWNNRSGGWDRREREVNPFENADAEPEP
AFTELDNTGINFDAYEDIPIETSGDNVPPSVNTFAEIDLGEALNLNIRRCKYVKPTPVQR
HAIPILLAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVLQRPRGSRTVYPLAVILSPT
RELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERAR
VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAAD
FLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVE
TKRGADSLENWLCINGFPATSIHGDRSQQEREVALKSFKSGRTPILVATDVAARGLDIPH
VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSMARSLSELMQEANQEVPA
WLSRYASRSSFGGGKNKRSGGRFGGRDFRREGSYSRGGGGGGYYGGGGGGGYGGGYGAPS
GGYGGETPSAWD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatcatgggctgacgtggttgactcagagaacaacactgcctctgggtctact
actcaaaactctcacaacactgcctctgggtctactaaaccgtcacgacctgcttatgtt
cctccacatctaaggaacaagcaaccatcttccgaccctgttcctccacttccagctaat
gatcgtgttggctataacggtccaccttccgcctctcgttgggctcctcctggtggttac
agggctgatgcaggtcgtccacgaggaactggcggtggctggaacaacaggagtggaggg
tgggaccgtagggagcgcgaagtcaacccctttgagaacgctgacgctgagcctgagcct
gcgtttactgagctggacaacactgggattaactttgatgcttacgaagatatcccgatt
gagactagtggggataatgtgcctccttctgtcaacacgttcgcggagattgatctaggg
gaggctttgaatctgaacatcaggaggtgcaagtacgtgaagccgacgcccgtgcagagg
cacgcgatccctatattgcttgccgggagggatttgatggcgtgtgctcagacggggtct
gggaagacggctgcgttttgttttccgataattagtgggatcatgaaggatcagcatgtg
ttgcagagaccacgtggctcaaggactgtttaccctcttgcggttattctatcgccgacg
agggagttagcaagtcagatacatgatgaagctaaaaagttctcttaccaaactggtgtg
aaggttgttgttgcttatggaggaacacctattaaccagcagctacgggaacttgagagg
ggagtcgatattcttgtggcgactcctggtagactaaatgatttgctcgagagagctaga
gtctctatgcagatgattagattcttagctcttgatgaggccgataggatgctggacatg
ggttttgagccacagattaggaagattgtcgaacaaatggacatgcctccgcgtggtgtt
agacagacgcttttgtttagtgctacttttccaagagagattcagagactcgcagctgac
ttcttagcaaattatatattcttggctgtgggtagagtaggttcaagtactgacttaatt
gtccaaagggttgagtttgtccttgactctgacaagagaagtcatctcatggacctgctt
catgctcagagagagaatggcatccaaggcaagcaagccctgaccttagtctttgtggag
acaaagaggggagccgactctttggaaaattggctgtgcatcaatgggtttccagcaacc
tccattcacggtgacagatcacagcaggaaagagaagtggcgctgaagtcattcaagagc
gggagaacgccgattctggtcgcaacagacgtggcagcgcgtggtctcgacattccccac
gtggctcacgttgtgaacttcgatctaccgaacgacattgacgactacgtccaccgtatt
ggacgaacaggacgcgctggcaaatcaggactagcgactgccttcttcaacgacggcaac
acctcgatggctagatctctctctgagctgatgcaagaagctaaccaggaagtccctgcg
tggctctcgcggtatgcgtcgcgttcctcctttggtggtggtaagaacaagcggtctggt
ggtcggtttggtggccgtgactttagaagggaaggttcttacagtagaggaggaggtggt
ggtggttactatggtggtggaggaggaggaggctatggcggtggatatggagctccaagt
ggtggatatggtggagaaactccaagtgcgtgggactga
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