KEGG   Brassica napus (rape): 106392330
Entry
106392330         CDS       T04128                                 
Name
(RefSeq) PH-interacting protein-like isoform X1
  KO
K11797  PH-interacting protein
Organism
bna  Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:bna00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:bna04121]
    106392330
Ubiquitin system [BR:bna04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     106392330
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR75_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_TEP1_C NBCH_WD40 Bromodomain Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_HPS5 Auxin_resp VPS8_N Beta-prop_WDR35_TULP_N Beta-prop_IP5PC_F WD_LRWD1 WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 106392330
NCBI-ProteinID: XP_048634818
LinkDB
Position
A4:21992444..22001661
AA seq 1545 aa
MDWIHKSSTPCLDSVPANAPPLQRQDRLLVCHSSPADVDMDLREVYFLILHFLSNGPCDR
TFGPLRDEILEKGLLPRRYHSSWSRSGTFTAPADDAISLPLTYDNLVERYPHIEKDHLVK
LLKQLILNPPFPSHLRLEGHTLTAADVPTLLGSGSFSLVHHKITESQKASHVASYLRWPH
MHADQVRGLSLREIGGGFRKHHRAPSIISACHAIAKPSTMVQKMQNIKKLRGHRNAVYCA
IFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVI
RVWRLPDGMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLPRIY
VPNPLDAGTGKSNFPSSNAASTSNASKSHQILCCAYNANGTIFVTGSSDSNARVWSASKS
NLDDAEQPTHELDVLRGHENDVNYVQFSGCAVAPRSSTTETLREDSYPKFKNSWFCHDNI
VTCSRDGSAIIWTPRSRKFHGKSGRWTKGYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN
MIIWSLDNRFVLAAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYD
GKTIIWDIWEGIPIKVYDIGRFKLVDGKFSQDGTSIVLSDEVGQIYFLNTGQGESQKAAK
YDQFFLGDYRPLIRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLG
ALGVEWRPSSIKFSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDDN
DSEYNAEVSSDGAKASPCSNSSNELECSSEDSDMENIYENSYNRKRRRQHPRADVATSSG
RRDKRILDEIDSSEFGNKRIKNRRIGVKASKRRYSDVKESRPQRAAAQNARSLLSKISGS
SSDEADDSSNSDSDRSASPLQQLEKPSQKLESLSNDKQKKRLIVKISVKKPTESVESKRS
VMSQADLEHVSSKSLEDNHKVIGIYSREAGSSSVDAKGASWCQDVPHSMNTPQREKANNQ
LIKSSDQDQTMCKWREETPLCESTKLAESENIVEAQTSNGDEDLSIVEPFCVQRRHCDVD
TSMEAEEIIPKKVRRLRLKLRHPSSPLKIEPDEVADDFGDGGEGLASTAPSSMNPVMDSG
PVRDNVRNSPAHNAEFGEATADVIRRKRSMRLKATSSQSSARNSVLRLRSIDKVKKQEIP
STSAYDGASLEEWPSTSRSRSASTSKQSLNTGIRLNNVARKVSWLMLSEHEQGCRYIPQL
GDEVVYFKQGHKEFLDSRELNDSDRSRYLPRNLGAVEFCKVEKLNYDTYPGSGESCCKMT
LRVLDSSSSHASRKEFQLTLPDLINFPDFIVEKTRYDAAMKTNWEVGDECRVWWRNESSE
GGSWWEGRIEASQVKCPNFPDSPWERYKVVYETGDTNLHSPWEFDNPQFPWEISTMDEEP
REKLLSLFAGLVKSISKYQDSYGIQKLNEAAQKMDFCNRFPVPLYPELIHQRVENRYYRS
MGSFKHDVDAMLSNAESYFGTNAHMRSKIKRLRDKITKTLRKMMI
NT seq 4638 nt   +upstreamnt  +downstreamnt
atggattggattcacaaatcatctactccttgtttggattctgttccagcaaatgctcct
cctcttcagcgacaggataggcttcttgtctgccattcttcgccagccgatgtagatatg
gaccttagggaagtctatttccttatactgcattttctttctaacggcccctgtgatcga
acctttgggcctctgagagatgagattttggagaaggggcttttgccccgtagatatcac
tcctcctggtcaagaagtggcactttcactgcccctgctgatgatgccatctcgctccct
ttgacttatgataacttagttgagaggtatcctcatattgaaaaggatcacttggtgaag
cttctcaaacaactcattttaaacccaccttttccttcacacctgagacttgaaggacat
actcttactgctgctgatgttcctacgctattgggttcgggctccttttcacttgtccat
cataaaattacagagtctcagaaagctagccatgttgcatcatatttacgttggccgcat
atgcatgccgatcaagtgcgtggcctaagtcttagagaaattggaggaggtttcagaaaa
caccaccgtgctccgtctattatttcagcatgtcatgcaattgcaaaaccatcaacaatg
gttcaaaagatgcaaaatataaagaagctcagaggacatcgtaatgccgtttactgcgct
atatttgatcgttctggaagatatgttatcactggttccgatgaccggcttgtcaaaatt
tggtcaatggaaactgcgctttgcttggctagctgccgcgggcatgaaggtgacattaca
gacttggccgttagttcaaacaatgctttggtagcatcagcgtcaaacgattttgtgatt
cgagtttggaggttgcctgatggaatgccaatttctgtattgcggggacatactggagct
gttactgcgattgcattcagtcccagacaggcgtcggtttaccaacttttatcgtcatca
gatgatggaacctgtcggatctgggatgctaggtactctcagtggcttcctcgaatctat
gttccaaatccgttggatgctggcactggaaaaagcaattttccatcttctaacgcggca
tctacaagcaatgcatcaaagagtcatcaaatactatgttgtgcgtacaatgctaatgga
accattttcgtcacgggtagctctgacagcaatgcgagggtttggagtgcctcaaaatct
aatttggatgatgctgaacagccgactcatgaactggatgttctacgtggccatgagaat
gatgtaaactatgtgcagtttagtggctgtgctgtggctccaagatcatctacaactgag
actctgagggaagatagttacccaaagtttaagaattcctggttttgtcatgacaacata
gtaacctgctctcgtgatggtagtgcaattatttggacaccaagatcacgtaaattccac
gggaaatctggacgctggacgaaaggatatcatttgaaggttccacctcctccacttcct
ccacaacctcctcgaggagggccacgccagaggcttcttccaacaccacggggtgtcaat
atgattatatggagcctggataatcgtttcgtacttgccgctatcatggattgcaggatt
tgtgtttggaatgctgctgatggtagcttagtgcattgtttaacaggtcacagtgaatcg
tcctatgtcttggatgttcacccattcaatccacggattgctatgagcgccggctatgat
gggaaaacaatcatctgggatatatgggagggtataccaatcaaagtatacgatatcggg
cgatttaagttggttgatggaaagttttcacaagatgggacatctattgtgctttcagat
gaagttggccagatatattttctaaacacgggacaaggagagtctcaaaaagctgcaaaa
tacgaccagttcttccttggtgattaccgtcctcttattcgagataccaatggacatgtt
cttgatcaggagactcagcttcttccccatcggaggaaccttcaagatcttctttgtgat
tcaagtatgattccgtatccagaacctgaccagacaatgtttcagcaacgcagactgggt
gcattaggagtcgaatggcgtccttcctcgataaagttttctgttggccctgattttagt
ctaggtcaagattatattatgcctcctttggcagatctggatagattgatcgagccactg
cctgagtttatagatgctatgtactgggaaccagaacatgaagttctgagtgatgacaat
gattcggagtacaatgctgaagtttcctctgatggagctaaggcaagcccatgttccaac
tcttcaaatgaacttgagtgcagttccgaggacagtgacatggaaaatatttacgaaaat
agttataatcggaaaagacgaagacaacatcctagagctgatgtggctacttcatctgga
aggcgtgataagaggattttggatgagattgatagctccgaatttggaaataagagaatc
aaaaacagaagaattggcgtgaaggcttcaaaaagaagatattctgatgtcaaggaatca
cgaccgcaaagagcagccgcgcaaaatgctcggtccttgctttcaaagatttctggaagc
tcttcggatgaagctgatgattcatccaatagtgactctgatagaagcgcatcacctttg
caacagttggaaaagccatctcagaagctggaatctctttcaaatgacaaacaaaagaaa
agattgattgtaaagatctcggttaagaagccaacagagtctgtggaaagcaagagaagt
gtaatgagtcaagctgatttggagcatgtttcttcgaaatctttggaggataatcacaaa
gtaattggtatatactctagagaagctgggtcaagttctgtagatgcaaaaggtgcgtca
tggtgtcaggatgtgccccattctatgaatacgccacagagagaaaaggcaaataatcaa
ttgataaaatcttcagatcaggaccagactatgtgcaagtggagggaagagactcctctt
tgtgaatccaccaaattagccgagtctgagaacattgtagaagcccaaacatctaatggg
gatgaagatttgtcaattgttgaaccattctgtgttcagcgaagacattgtgatgtagat
acttccatggaagccgaggagattattccgaagaaagttcgacgactgagattaaagctt
cggcaccccagcagtcctctaaaaatagagcctgatgaggtagcagatgattttggagat
ggtggagaaggtcttgcatccacagctccctcttccatgaatcctgttatggactctgga
cctgtgagagataatgttagaaactctcctgctcacaacgctgagtttggagaagctaca
gccgatgtgatacgtaggaagagatctatgagactgaaggccacttcaagtcagtctagt
gcaagaaacagtgtattacgtttgaggtctatagataaagtaaagaaacaagaaattcct
tccacaagcgcgtatgatggtgcatcacttgaagaatggccttctacttcaaggtcccgg
tctgcaagtaccagcaaacaaagtcttaataccgggataaggttgaataatgtggcaagg
aaagtctcatggttgatgttgtcagaacacgagcaaggctgccgttatataccccagctt
ggggatgaagttgtttacttcaagcagggtcataaagagttcctagacagtagagaatta
aatgacagcgaccgatcaaggtaccttcctcgaaacctaggagcggtagagttttgtaaa
gtcgagaaactcaactacgatacatatcctggttctggcgagagctgctgcaaaatgact
ctcagggttctggattcttcttcgtcgcatgcctcccgcaaagagttccaactaacactg
cctgacctcattaattttccggattttattgtggagaagactcgatacgatgctgcaatg
aagacaaactgggaagtcggagatgaatgccgtgtgtggtggagaaacgaatccagtgaa
ggcggttcttggtgggaaggaaggatcgaggcttcacaggttaagtgccctaacttccca
gacagtccatgggagagatacaaagttgtctatgaaactggggacacgaatctccacagc
ccctgggagtttgacaatccccagtttccttgggaaatctctaccatggacgaagagcca
agagagaaactactttctttatttgctggactagtgaagtcaatcagcaagtatcaggat
agttatggaatccaaaagctaaacgaagctgctcaaaagatggatttctgcaataggttc
ccagttcctttatacccagagctgattcaccagagagtagagaatcggtactacagaagt
atggggtcgtttaagcacgacgtggatgcaatgctgtcaaacgctgaatcttattttggt
acaaacgcacatatgcgttctaagataaagcgactccgagataaaatcacaaaaacgttg
agaaagatgatgatatag

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