Brassica napus (rape): 106392497
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Entry
106392497 CDS
T04128
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106392497
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106392497
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Pectate_lyase_4
Nab2-zf4
Motif
Other DBs
NCBI-GeneID:
106392497
NCBI-ProteinID:
XP_013688762
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Position
A5:2228470..2229644
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AA seq
329 aa
AA seq
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MANNTSFSCAIILLSVVIFLINSSNAMLSFNVQRYGARGDGKTDSTKPFSTAWSLACGSE
AQSMVYIPHGTYLVRNLVFWGPCKNIITFKIDGKLVAPKNYWSIGNSGYWILFAKVNRIL
VYGGTIDAKGAGYWSCRKKGGHCPQGARSISFSWCNNVLLSGLTSLNSQNIHVTVHHSSH
VRIQNIRIRAPSRSPNTDGIIVQSSSGVTISGAVIGTGDDCIALNQGSVNIYIERVLCGP
GHGISIGSLGDHADEEGVNNVTVTNSVFTKTRNGVRIKSWARPSTGFVRNVEFRNLVMRN
VGNPLIIDQNYCPSGKGCPNQVNNRVELT
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggccaataacacatcattttcttgtgctatcatattactctctgtcgtcatctttctt
atcaactcatcaaacgcaatgctatcttttaacgtacaaagatacggagctagaggcgat
gggaaaacagactcgaccaaaccattttcgacagcttggtcattagcatgcggctcagag
gctcaatccatggtctacattccccatggaacatacttggtacgaaatcttgtcttttgg
ggtccttgcaagaacataataactttcaaaatcgatggaaaactcgtggctcccaaaaat
tactggagtataggtaattctggttactggatcctattcgctaaggtaaaccggatattg
gtttacggtggaacgattgatgctaaaggagctggttattggtcttgtagaaagaaaggt
ggccactgtcctcaaggtgcaagatctatatcgtttagctggtgcaataatgttctacta
agtggcctaacgtcgttgaatagccagaatattcatgtcacggttcatcattcttctcat
gttcggattcagaacataagaattagggcgccgagtagaagccctaataccgatggtatt
atcgtccagtcttcgtctggggtcaccattagtggggcagtcattggaactggtgatgac
tgcattgctcttaatcaaggttctgtgaacatttatatcgaacgtgtgctgtgtggacca
ggacatggaatcagcattgggagtcttggggatcacgccgatgaggaaggtgtcaataat
gtaaccgtcacgaactctgttttcaccaagacgcgaaacggtgtaagaataaagagttgg
gctaggccgagcacagggtttgtgagaaatgtggagtttcgaaacctggtaatgaggaat
gttggtaaccccctaatcatcgatcaaaactattgccctagcggaaaaggctgccctaat
caggtaaataaccgagttgaattgacgtaa
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