Brassica napus (rape): 106393763
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Entry
106393763 CDS
T04128
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106393763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106393763
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106393763
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
ARM_TT21_N
TPR_14
TPR_10
HEAT_Nup120
TPR_19
TPR_7
SRP_TPR_like
TPR_11
Motif
Other DBs
NCBI-GeneID:
106393763
NCBI-ProteinID:
XP_048610685
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Position
C4:complement(41115025..41118856)
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AA seq
778 aa
AA seq
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MDSISSDAARDGSICDEAIVLSVTSALAKDALSYFQSGKFHECIDILIQLNHKKRNDPKV
LHNIAIAEYFKNACSNSKKLLEDLNTVKKQSEEFAKEPLEAVNPGSNVSVSKHQFDSTIT
TLNIAVTWFHLHQYAKCLSILDPLFLNIEPLDETIALQICFLMLDSALACHDAVKFLEVF
GHLDKSFGVGFGTHEEIGSTMQLSSNQVSKTSSLLSSSAASDALKSDLAAAESGLCEEGL
EYDNVLAEIEAEKRMKPVGHIPANNLLKTIGERSILTVDVKLELQLYKVRFLLLTRNVKL
AKREVKHAMNIAQKRDSSMALLLKSQLEYAHGNHRKAIKLLLVSGIQKELRTSGIFNNNL
GCIYYQLGKYQAASVLFSKALRNCSSLRKDNPVKLFSLSQDKSLLITYNCGVLYLACGKP
LLAAQCFQKASLVFCRQPLLWLRIAECCILALQKGLLEEGNTSSDRSEIRVHVIGKGKWR
QLMMEENGFVELGGSAQWPKLSLPLARVCLSNSMYLLNVSLMNDYSKSDLESPLSVMINE
TKEASWSDHGDADTNSELKEAKGGMNQDIIQNSLSAYKDIRRRENHLLKQALLANMAYVE
LELENPIKALSAANSLLQLPDCSKIYVFLGHIYAAEALCLLNRPGEAGAHLSAYLLGQED
FKLPFAQEDFDPWRMNMSSDCEETSDCSTGNARDSLKPEEARGALFANLAALFATQGHYD
QARPFIQHALALLPSNVQATITAVYIDLMVGRSQDAVARLKQCTRVSFVPGRLEVRAS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggattcgatatcatcggacgccgctagagatgggtcaatctgcgacgaagccatcgtt
ctgtctgtaacttctgcactcgctaaagacgctctctcctatttccaatctggcaaattc
cacgagtgtatcgacattctgattcagctcaaccacaagaaacggaacgatcccaaggtt
cttcacaatattgcaattgcagagtacttcaaaaatgcttgctctaattccaagaaacta
ctcgaagatcttaacactgtcaagaaacagagtgaagaatttgcaaaagaaccactggaa
gctgtaaaccctggatctaacgtctctgtgtccaagcatcagtttgatagtactataaca
actctcaacattgcagttacctggtttcatctgcatcagtatgcaaaatgtttatccatt
ctagatcctctgtttctaaatattgagccgctagacgagactattgcacttcaaatctgc
ttcttgatgctggatagtgcgctggcttgtcatgatgctgtcaaatttttggaggtgttt
ggccatctggacaaatcttttggtgttggttttggaactcatgaggaaattggaagcaca
atgcaactttcttcaaatcaggtgtcaaaaacatcttctctcctgagcagctcggcggcc
tcagatgctttgaagtctgatttagcagctgctgaaagtggtttgtgtgaggaaggtcta
gagtatgacaatgttctagcggaaattgaggccgagaaacgaatgaagccagttggccat
attccagcaaacaatcttctcaagacaataggagaaaggtccatcttgactgttgatgtg
aagcttgagttgcagctttacaaggtccggttcttacttcttacgagaaacgtaaaactg
gctaagcgtgaagttaaacatgcgatgaacattgctcaaaaaagggactcctctatggct
ctcctcttgaaatctcagcttgagtatgctcatgggaatcatcgaaaggctataaagctt
ttgttggtctccggtattcaaaaagaattgaggacttcaggaatcttcaacaacaacctt
ggttgcatatactatcagcttggaaagtatcaagccgcctctgtgttattttcgaaagct
ctaaggaattgttcatcactaagaaaggataatccggtgaagttgttttctctctcacag
gataagtctctgttgatcacttacaactgcggtgtgctttatttagcttgtggaaagcct
ctacttgctgctcaatgcttccagaaggcaagcctagttttctgcagacagcccctcctc
tggctccgtatagctgaatgctgtatactggctttacaaaagggtcttttggaagaggga
aacacttcttcggatagatcagaaatcagagtccatgtgattgggaaagggaagtggaga
caacttatgatggaagagaatggattcgtggaacttggtggaagtgcccaatggccaaag
ctttcattgccactagcacgggtgtgtctctcgaatagcatgtacttgctcaatgtgtct
ctcatgaatgactactctaaatcagatcttgagtcaccactatccgtgatgataaatgag
accaaggaggcatcatggtctgatcatggggatgctgataccaactcagaattgaaggag
gcaaaaggaggaatgaaccaggacataattcaaaactccctctccgcttacaaggatatc
cgtagaagagagaatcatttgctcaaacaggctcttcttgccaatatggcttacgttgaa
ttggagttggagaatcctatcaaagccttgtctgctgctaattcactcctgcaacttcca
gattgttcaaagatatatgttttcttaggccatatttacgcagcggaggctctctgcttg
ctcaacagacccggtgaagctggtgcgcatttatctgcctatctactcggacaggaagat
tttaaactaccatttgcgcaagaagactttgacccgtggcggatgaacatgagttccgac
tgtgaggagacatcggattgttccacaggaaatgcccgggattcactcaagccagaagaa
gctcgtggagcactttttgcaaaccttgccgccctctttgcaacacaagggcattatgac
caggccagacctttcattcaacacgctttagctctcctaccgagcaatgtacaagctacg
attacagcggtctacatcgatctcatggtgggtaggtcgcaagatgccgttgctcggtta
aaacagtgtacccgtgtgagctttgtccctggcagattggaagtgagagcctcgtaa
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