Brassica napus (rape): 106394184
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Entry
106394184 CDS
T04128
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106394184
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106394184
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
LysM3_LYK4_5
Pox_L5
Motif
Other DBs
NCBI-GeneID:
106394184
NCBI-ProteinID:
XP_048634202
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Position
A4:complement(20980702..20982186)
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AA seq
410 aa
AA seq
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MIHKTSCLLLLPLTLIFLDFILISSLAKPTPITSLNVLTYGAKPDGLKDSTKAFLAAWQV
ACASPNPTTIIVPKGRFLVRNLVFQGNKCTNAPISFRIAGSIIAPEDFRVIASSLQWIMF
DGVTNVSIYGGVLDAQGSSLWKCKNSGGKKCPTGAKTLLFTDSNNISIYGLTSINSQKFH
IVIDQSNNVKIDGVKVYADADSPNTDGIHIGKSHSVNITNSRIGTGDDCISIGPGSTHVS
IQGIQCGPGHGISIGSLGRSEDEQGVENVLVSNVDFTSTDNGVRIKTWGKYSKSFVRNIV
FQHIKMKMVKNPIIINQHYCLDKPCPKKESGVEISNVRYEDIQGTSNTEVAVMLDCSREK
PCTDIVMRNVNLVLQRINGSAQASCNNANGLANDVVVPFTPCLKRDMLLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgattcacaaaacatcatgtcttcttcttcttcctctgactctcatctttcttgatttc
atcctaatctcatcattagccaaaccgaccccaatcacatccctcaatgtcttaacctac
ggagctaaaccagatggcttaaaagactcaaccaaagccttcttagccgcatggcaagtc
gcatgtgcctctcctaatcccacaactattattgtaccaaaaggacggttcttggtcaga
aaccttgtattccaaggcaacaaatgtacgaatgctccaatatcttttcgtatagccggt
tcaattattgcaccggaggattttagagttatcgcaagctcactacaatggatcatgttc
gatggagtcactaacgtttcaatctacggtggtgtacttgacgcacaaggctctagtttg
tggaaatgcaagaacagtggtggcaaaaaatgccctactggcgctaagactttgttattt
actgattcgaataacatcagtatctacggtttaacgtcgatcaatagccagaagttccat
atagttatcgaccagagcaataacgttaagattgacggcgttaaagtttatgctgatgcg
gatagccctaacaccgatgggattcacatcgggaagtctcactcagtgaatatcactaac
tcaagaattggaaccggggacgattgcatctccatcggtccaggatccactcatgtttct
atacaaggcattcaatgcggtccaggccatggcatcagtattggaagtcttggaagatca
gaggacgagcaaggagtggagaacgtgctggtgagtaacgtggatttcacgtcaacggat
aacggagtaaggatcaagacatggggaaaatatagcaagagttttgttagaaacattgtt
ttccaacatattaaaatgaagatggtcaagaaccctatcatcattaaccaacactattgt
cttgacaaaccttgccctaaaaaggaatctggagttgaaatatcaaatgtgagatatgaa
gatatacaagggacatcgaatacggaagtggcggttatgttggattgcagtagggagaaa
ccatgtaccgatattgtaatgcgcaatgtgaatctcgtcttgcaaaggattaatggatcg
gctcaggcttcttgcaataatgcaaatggattagctaatgatgtcgttgtcccgttcact
ccttgtctgaagagagacatgcttttgatatga
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