Brassica napus (rape): 106394480
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Entry
106394480 CDS
T04128
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
bna
Brassica napus (rape)
Pathway
bna03082
ATP-dependent chromatin remodeling
bna03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106394480
03083 Polycomb repressive complex
106394480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106394480
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
106394480
Histone modification proteins
HAT complexes
HATB complex
106394480
HDAC complexes
Sin3A-HDAC complex
106394480
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
106394480
PRC2.2
106394480
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
106394480
Heterochromatin formation proteins
Other heterochromatin formation proteins
106394480
Chromatin remodeling factors
NuRD complex
106394480
NuRF complex
106394480
NuRF complex (fruit fly)
106394480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
WD_LRWD1
Beta-prop_EML
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
MIOS_WD40
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_IFT140_1st
Beta-prop_RIG_1st
WDR90_beta-prop_4th
Beta-prop_NUP159_NUP214
Cytochrom_D1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_Vps41
DUF6922
Motif
Other DBs
NCBI-GeneID:
106394480
NCBI-ProteinID:
XP_013690506
UniProt:
A0A816LS78
LinkDB
All DBs
Position
C7:8754639..8757094
Genome browser
AA seq
407 aa
AA seq
DB search
MADEGKEEQGMDQVEEDFSIWKKNTPFLYDLMISNPLEWPSLTVHWVPSALTPYAADPYF
NVHKLILGTHTSGGAQDFLMIADAVIPTPDTEPGLGGTNQDPIVPKVEIRQKIRVDGEVN
RARCMPQRTTLVGAKTSGCEVFLFDYTKHASKPQTSDCDPDLRLLGHDKEGYGLSWSPFK
EGYLLSGSQDQKICLWDVSATPQDKKLNAMFVYEGHECAVEDVSWHMKNENLFGSAGDDG
RLVIWDTRTNKMQHHVKVHEKEVNYLSFNPFNEWVLATASSDSTVALFDLRKLNVPLHVM
SSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHG
GHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAESIYRDEDEADND
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgaaggtaaggaggagcagggaatggatcaggtggaggaggatttctctata
tggaagaagaacacgccattcctctacgatctcatgatctccaaccctctcgaatggccc
tctctcaccgtccattgggtcccatcagcgctgactccttacgctgcagacccatacttc
aacgttcacaagctcatactcggaacccacacctccggtggtgcccaagacttcctcatg
atcgccgacgccgttatcccaactcccgacaccgaacctggcttaggcggcacaaatcaa
gatcccatagtccctaaggtggagattaggcagaagatacgtgttgatggagaagtgaac
agagcgcggtgtatgccgcaaaggacgacgcttgtgggtgcaaagacaagtgggtgtgaa
gtatttctgtttgattacaccaagcacgcttcgaagcctcagacaagtgattgtgatcct
gatctgaggcttttgggacatgacaaggaagggtatgggttgtcttggagtccttttaaa
gaaggttatctcctgagtggttcacaggatcagaagatttgcctttgggatgtttctgct
acaccgcaagataagaaattgaatgcaatgtttgtgtatgagggacatgaatgtgctgtg
gaagatgtttcgtggcatatgaagaatgagaacctttttgggtctgcgggtgatgatggt
agattggtgatatgggacacacggacaaacaaaatgcaacaccatgtgaaagttcacgag
aaagaggtgaactatctgtctttcaatccgtttaacgaatgggttttagccacagcttcc
tcagactcaactgttgccttgtttgacctccggaagctgaatgtacctttgcacgtcatg
agcagccatgagggagaggttttccaagtggagtgggatcctaaccacgaaacagtgctt
gcatcttccggtgaagacagaaggctgatggtctgggatcttaatagggttggagaagaa
cagcttgagatagagttggatgcagaagatggtccaccagagttgctcttctctcacgga
ggccacaaggctaagatctctgattttgcttggaacaaaaacgagccttgggtcattgca
agtgtagcagaagacaacagtcttcaggtgtggcaaatggcggaaagcatctatagagat
gaagatgaagctgacaacgactag
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