Brassica napus (rape): 106394864
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Entry
106394864 CDS
T04128
Name
(RefSeq) putative pectate lyase 11
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106394864
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106394864
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106394864
NCBI-ProteinID:
XP_013695591
UniProt:
A0A816IPR1
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Position
C9:1969875..1972664
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AA seq
412 aa
AA seq
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MFSYSSNPFVYTFIFLLSVGNRIAFSSSSSPQAQDPKLVVDEVNRSVFNASRRSLAYLSC
RTGNPIDDCWRCDPNWDTNRQRLADCAIGFGKNAIGGRDGRIYVVTDPGNDDPVNPIPGT
LRHAVTQEEPLWIIFKRDMVIKLQKELIITSFKTIDGRGASVHITDGPCLKIHEKTNIII
HGINIHDCKPGPGGMIRDGPDHTGMWIPSDGDAVAIFGGKNVWIDHCSLSNCDDGLIDAI
HGSTAITISNNHMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFH
VVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDTRFNKEVTKHEDAPESQWRDWNWRSEG
DMLLNGAYFRQSGAGAPSTYARASSLSARPSSLVGSITTTAGALSCRRGGHC
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgtattctagtaatccttttgtttacacttttatatttctcctatcagtcggc
aacaggattgcattctcttcgagttcgtcaccgcaggctcaggatccgaagctagtagtt
gacgaagtcaatagaagtgtattcaatgcgtcaaggaggagcctggcctacttatcttgt
agaaccggaaatccaatcgatgactgttggcgttgcgatccaaactgggacacaaaccgc
caacgactagccgattgtgctattggttttggcaaaaacgccatcggaggccgtgacggc
cgaatttacgtggttacagatcctggcaacgacgatccagttaaccctatacctggaacc
ctaagacatgcggtcacacaagaagagccattatggatcattttcaagagagatatggtc
attaaactccaaaaagaactcatcatcacatctttcaagaccattgatggtagaggcgca
agcgttcacattaccgatggcccttgcttaaaaattcacgaaaaaactaatataatcatc
catggcattaacatccatgactgcaaaccaggacctggtggcatgattagagatggtcca
gatcatactggaatgtggatcccatcagatggagatgcggtagcgatattcggagggaaa
aacgtgtggattgaccattgttcattatctaactgcgatgatggtctcattgacgccata
catggttcgacggctataaccatatcgaacaaccatatgacacaccatgacaaggtcatg
cttttagggcatagcgatagttatacagaggacaagaacatgcaagtcaccattgcgttt
aaccatttcggagaagggctcgttcaaaggatgccacggtgcagacatggatatttccat
gtggtgaacaatgattatactcactgggaaatgtatgccatcggtggaagtgcttctccg
acgatatacagccaaggcaatagatttctcgctcctgatacccggtttaacaaagaggtt
acaaaacatgaagatgcacccgaaagccaatggagagattggaactggagatctgaaggg
gatatgttgttgaacggagcatatttcagacaatccggtgcaggagctccatcgacttat
gcaagagcttctagcctaagtgctaggccatcatcgcttgtgggttccatcacgactacg
gcaggagcactaagttgtcgacgaggtggccactgttga
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