Brassica napus (rape): 106395608
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Entry
106395608 CDS
T04128
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106395608
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106395608
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Pectate_lyase_4
NosD
LSM_int_assoc
Motif
Other DBs
NCBI-GeneID:
106395608
NCBI-ProteinID:
XP_013691465
UniProt:
A0A078GDD7
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Position
C4:61568002..61569948
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AA seq
393 aa
AA seq
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MAKNISFPLVIILFSIVFFFINSSNAMPSFNVQRYGARGDGRTDSTKPFLTAWSLACRSK
ARAMVYIPRGTYLVTNLVFWGPCKNHITLKIDGTLVAPANYWSIGNSGYWILFAKVNRIS
VSGGTIDARGAGYWSCRKKGSHCPQGARSISFSWCNNVLLSGLTSLNSQNMHVTVHHSSN
VRIQNIRIRAPSGSPNTDGIHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGP
GHGISIGSLGDYVNEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVRNVVFRNLIMRN
VDNPVIIDQNYCPNGRGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSRSNHCTGIRL
HDIRLTYMRRSSASYCRNVHGRRSGVVIPRNCL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaatatctcttttcctttagtcatcatactattttccattgttttctttttt
attaactcgtccaacgcaatgccttcgtttaacgtacaaagatacggagctagaggtgat
ggacgaactgattcgaccaagccatttttgacggcttggtcattagcctgccgctctaag
gctcgagccatggtctacattccccgcggaacatacttggttacaaacctagtcttttgg
ggtccttgcaaaaatcatataactttaaaaatcgatggaacactcgtggctccggctaat
tactggagtataggtaattctggttactggatcctattcgctaaggtaaacaggatctcg
gtttccggtggaaccattgatgctagaggagctggttattggtcttgtaggaagaaaggt
agtcactgtcctcaaggtgcaaggtctatatcgtttagctggtgcaacaatgtactacta
agtggcctaacgtcattgaatagccagaatatgcatgtcacggttcatcattcttctaat
gtaaggattcaaaacataaggattagggccccaagtggaagccctaacaccgatggtatc
cacgtccagtcttcttctggagtcaccattagtggtggaacaattgcgaccggtgatgat
tgcattgctcttagccaaggatctaggaacatatggatcgaacgcgtgaactgtggacct
ggacatggaatcagcattgggagtcttggggattacgttaatgaggaaggtgtgcagaat
gtaaccgtcacgagctctgttttcaccaagacacaaaatggagtaaggataaaaacgtgg
gctagaccgagcagagggtttgtgaggaatgtggtatttcgaaatttgattatgaggaat
gtcgataatccagtgataatagatcaaaactattgtcctaatggaagaggctgccctcgt
cagagctctggtgtgaagataagtggtgtgacgtttgcaaacataaaaggaacatcaaca
acaccaatagctatgaaactggattgtagtagaagcaatcattgcacaggaataaggcta
catgacattagacttacttacatgagaagatcatcagcttcttattgcaggaatgtccat
ggacgaagatctggagtagtgattccaaggaactgtctctga
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