Brassica napus (rape): 106396023
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Entry
106396023 CDS
T04128
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106396023
04121 Ubiquitin system [BR:
bna04121
]
106396023
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106396023
Membrane trafficking [BR:
bna04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
106396023
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106396023
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-RING_11
zf-C3HC4
zf-ANAPC11
Rad50_zn_hook
zf-RING_5
zf-Nse
zf-C3HC4_3
zf-RING_16
CxC4
zf-FPG_IleRS
FAR1_N
VPS18_RING_C
Prok-RING_1
DZR_2
Motif
Other DBs
NCBI-GeneID:
106396023
NCBI-ProteinID:
XP_013691774
UniProt:
A0A816J866
LinkDB
All DBs
Position
C4:1934039..1936010
Genome browser
AA seq
315 aa
AA seq
DB search
MSSGRNTHWCHRCQRAVRLHGPDPVCSYCGGGFVEELDTPQALAANPFDIFRSHRDVDPA
FDLMDAFSAFMRNRLADRELRGRSITSRPESFPGLAPLLIFGGQVPYRDNAVEALFSNGS
PGISITRGNTGDYFFGPGLEELFEQLSTGGSTRRGPPPAPRSSIDALPTVKIAQRHLRSS
DSNCPVCKEEFELGAEAKQMPCNHVYHSDCIVPWLVQHNSCPVCRQELPSGASSSENRST
TTRRNYRSSSNSNERRSPFSSLWPFRSSGSSSNNNTQNRGGTRNSDATDENHNYHHQQQQ
QQQQSHMGYSGWPFD
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcggtagaaacacccactggtgtcacagatgccagcgtgctgtccggcttcac
ggcccggaccctgtatgttcttactgtggaggaggattcgttgaggagctcgacacgcct
caagccttagccgccaacccatttgatatctttagatctcacagggacgttgatcctgct
tttgatctcatggatgctttctccgcctttatgaggaaccgcttagccgaccgagaactc
agaggaagatccatcacttcccgtcctgaaagcttccccggcttagctcctttgttgatc
tttggtggtcaggttccttatagagacaatgcagtcgaagctctcttcagtaacggctcg
cctggcattagcatcacgcgtggtaacaccggcgactacttcttcggccctggtcttgaa
gaactctttgagcagctctctaccggcggctctactcgccgtggcccgccgcctgctcct
agatcttcaatagatgcgttgccaaccgtcaagatagcgcagaggcatctcaggtcgtcg
gactcgaactgtcctgtgtgcaaagaggagttcgagttgggagcagaggcgaaacagatg
ccgtgtaaccatgtatatcattctgactgtatcgtcccgtggctggttcagcacaactca
tgccctgtctgtcgccaagagctgccatcaggagcttcaagcagcgaaaacagaagcacc
accaccagaagaaactacagaagtagtagcaacagcaatgaaaggaggagtcctttctct
tccttgtggccgttccgttcgtctggttcaagctcaaacaacaacactcaaaaccgtgga
ggcacgagaaactctgacgcaactgatgagaaccataactatcatcaccagcaacagcaa
cagcaacagcagtcacatatgggttacagtggctggccttttgattag
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