Brassica napus (rape): 106396068
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Entry
106396068 CDS
T04128
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106396068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106396068
03019 Messenger RNA biogenesis [BR:
bna03019
]
106396068
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106396068
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106396068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Zf-C2H2_ZNF451
Motif
Other DBs
NCBI-GeneID:
106396068
NCBI-ProteinID:
XP_013691817
LinkDB
All DBs
Position
C4:8712906..8717632
Genome browser
AA seq
930 aa
AA seq
DB search
MENSRRPFDRSRDPGPIKKPRLSDEPIRQLQSQRPLGGAAASSSRFRAGGGGREAESSSE
AYEPQLVHPHYELVNQYKSALSELTFNSKPIITNLTIIAGENVHAAKAVVSTICNNIIEV
PSDQKLPTLYLLDSIVKNIGRDYIKYFAARLPEVFVKAYRQVDPPMRSNMRHLFGTWKGV
FHPQILLQIEKELGFNARSDGSAAAVTTGRTDLQSQRPPNSIHVNPKYLERQRLQQSGRT
KVMVTDVPDIASNLTRDPDRLERVSSTASGGLWAGPAKVNTIRRPQKDSLSEPLYEKDME
SISEEYEYASDLPHNSRSVVKKVGPRITDDGSGKQWYEAMSRGPDLISDQREGLHTKSRV
SNYATARLENSESSGPSRNIGVPYDSWKNSEEEEFMWDMHSRVSETDVATINPKIEFQAS
DESERLESKNHLLKRPRYSAVDPRLDPVNSYSREQKDSSILGPWTSSPRSLHDSEVFPSI
SAASNAARKGIQPQSRIASSGILPISGPVSDKQSKQNVSKQDSGRAHSLTQRDPRASRFP
AKSQSESVRPLSSSSQFKNTNTLELPDSSLVEKFDSKSTAENARGQANMNDLLAAVMKSG
ILSNNATCGGSKEEMSQNGADPRALTLSAVSKDKILPTSAAGAVSLTGVTSAQTSKEKSK
ASDPISSLLSSLVSKGLISASKTELLASKTELPSLAQCAAPSVSQDHSPDHSTSSSMSVV
PSEAQPVVLVKKDPSTALKVALVETEKMEPENLIGLKFRADKIRELHPSVISSLFDDLPH
LCTSCGVRLKQKEELDRHVEELHDKKKLELSGANSKCRVWFPKADDWIAEKSRELEPEYE
EVLSESESAGEDAPAVAADENQSACILCGEMFEDYFSQEMDQWMFKGASYLAIPPDESEA
NGPIVHAACLTKSSLPGLGVGNAIKQEMIE
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtagaccgtttgatagatccagagatccggggccgattaagaaaccc
aggctcagcgacgaaccaatccggcagcttcagtcgcagagaccgctcggtggtgccgcg
gcgtcgtcgtcaaggtttcgagctggtggtggtgggagagaagcggagagtagtagcgag
gcgtatgagccgcaacttgttcatccgcattacgagcttgtgaatcagtataagtcggct
ttatccgagctcacgttcaactcgaagccgataattacgaacctgacgataatcgctgga
gagaatgttcatgctgcaaaggccgtcgtgtccaccatttgcaataacatcatagaggta
ccaagtgatcagaagctgccaacgttgtacctgttggacagcattgtgaagaacattgga
agagattacattaagtactttgctgccaggctgcctgaggtatttgttaaggcctataga
caagttgaccctcctatgcgttctaacatgcggcatctttttggaacctggaaaggagtc
tttcatccgcaaatacttctgcaaattgagaaagaacttggctttaatgctagaagtgat
ggctcagcagctgctgttaccactggcagaactgatctgcaatctcagcgaccaccaaat
agcatccatgtgaatcccaaatatctagaaaggcaacgcctccaacagtcagggcggaca
aaagtaatggttacggatgtccctgatatcgcatccaatttgactagggatccagataga
ctggagagagtttcaagcacagcttctggaggcttgtgggcaggtccagctaaagtgaat
accattcgacgacctcagaaagactcactcagtgaacccctctacgagaaggatatggag
tcaatatcagaggaatatgaatatgcttctgatctaccgcacaattctagatcagtggtt
aagaaagttggtcctaggattactgatgatgggagtggaaaacaatggtacgaagctatg
agcaggggtcctgatctgatttcggaccagagggaagggttacacaccaaaagcagagtt
tctaactacgcaactgcgagacttgaaaattcggaatcaagtggtcccagtagaaatata
ggcgtgccttatgatagttggaaaaactccgaggaagaagagtttatgtgggacatgcat
tcaagggtatccgaaacagatgtggccactatcaacccgaagattgaatttcaggcttca
gatgaatcagagagactggaatctaaaaatcacctcttaaaacggccaaggtattcagct
gtcgatccaaggcttgatccggtgaattcttattccagagagcaaaaagattcaagtatt
cttggcccttggacgtcttctcctagatctttgcatgattcagaagtttttccttctatt
agtgcagcctcaaatgcagctagaaagggaattcagcctcaatctaggattgctagctct
ggaattttgccaatctcaggacctgtgtcagataaacagtcgaaacagaatgtgagcaag
caagattctggaagagctcactccctcactcaacgtgatcctagggcttcccggtttcca
gcaaaatctcaaagtgaatccgtgcggcccttatcttcaagtagccagtttaagaacacg
aatacgcttgaactgcccgattcatctctagttgaaaagtttgactctaagtcaacagct
gaaaatgctcgaggacaagccaacatgaatgatttgttggcagctgtcatgaagagtgga
atcctttctaataatgcaacttgtggtggaagcaaggaggagatgtctcaaaacggggct
gacccaagggcactaaccctgtcagcagtgtctaaggataagattttgccaacttcagcc
gctggcgcagtgtcacttactggtgtcacatcagcacagacctcaaaagagaagagtaag
gcctcagatcctatttcgtccctcttgagctccttagtttcaaagggcttgatatctgct
tcaaagacggagctgctagcttcaaagacggagctgccatctctcgctcaatgtgcggct
ccttccgtttcacaggaccatagtcctgatcattctaccagtagttctatgtctgtggtt
ccatcagaggctcagccagtggttcttgtgaagaaggatccttccactgccctgaaggta
gcactagttgaaacagaaaaaatggaacccgaaaacctcataggattgaagttcagagca
gataaaatccgtgagcttcacccctcggtgattagtagtctctttgatgaccttccacat
ctctgcacctcctgtggcgttcgccttaagcaaaaggaagaacttgacaggcacgtggag
gagctgcacgataagaagaagctcgagttaagtggcgcgaacagtaaatgtagggtttgg
tttccaaaggctgatgactggatagcagagaaatctagagagctagaacctgaatatgag
gaagttctgagtgaatccgagagtgctggtgaggatgctcccgccgtagctgctgatgag
aaccagagcgcatgtatattatgtggagagatgtttgaggactatttcagtcaagaaatg
gatcaatggatgttcaaaggagcttcttaccttgccattcctccggacgagagtgaggcc
aatggaccgatcgtccatgcagcttgtttgaccaagagttctttaccgggcttgggtgtt
gggaatgcaatcaaacaggaaatgattgagtag
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