KEGG   Brassica napus (rape): 106396168
Entry
106396168         CDS       T04128                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106396168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    106396168
Spliceosome [BR:bna03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    106396168
 Complex C
   U5 SnRNP specific factors
    106396168
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_SCAP NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_RIG_1st Beta-prop_NWD2_C Nbas_N WD40_like KNTC1_N RMC1_N
Other DBs
NCBI-GeneID: 106396168
NCBI-ProteinID: XP_013691943
LinkDB
Position
A5:complement(2198140..2199762)
AA seq 334 aa
MEIMPRENENALSAPTPMELGPGPYGKQRTSSLEAPIMLLTGHPSAVYTMKFNPSGTLIA
SGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSMIVSASPDKTVRAWDVETGK
QVKKMAEHSSFVNSCCPTRRGLPLIISGSDDGTAKLWDLRQRGAIQTFPDKYQITAVSFS
DAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVW
DMRPYAPQNRCVKVFEGHQHNFEKNLLKCSWSPDGTKVTAGSADRMVHIWDTTTRRILYK
LPGHKGSVNECVFHPSEPIIGSCSSDKDIYLGEI
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggagatcatgccaagagagaatgagaacgctttgtcagctcctactcccatggagttg
ggacctggtccctacgggaagcagcgaacatcaagcctcgaagcgcctatcatgctgcta
actggtcacccgagcgctgtctacaccatgaagttcaacccatctgggactctcatcgca
tctggatcacacgacagagagattttcctctggagagtccacggtgactgcaaaaacttc
atggttctgaaaggccacaagaacgctatcctcgatcttcactggacaagcgacggctcc
atgatcgtgtcagcgagtccggacaaaaccgtgagagcgtgggacgttgaaactgggaaa
caagtcaagaagatggctgagcattcttcctttgtgaactcctgctgccctacgcgcaga
gggttgcctttgatcatcagtgggtctgatgatggaaccgcaaagctttgggatctgcgt
cagagaggagctatacagacgtttccggataagtaccaaatcacagcggtgagcttctcc
gatgcagctgataagatcttcactggaggtgttgacaatgatgttaaagtctgggacttg
cggaaaggtgaagccaccatgacgcttgagggacatcaagataccatcacggggatgagt
ttgagtccagacggttcctaccttctcaccaatgggatggataacaagctatgcgtgtgg
gacatgcggccttacgctccgcagaaccggtgtgtgaaggtctttgaagggcatcagcac
aactttgagaagaatctgctgaagtgttcttggtcgcctgatggtactaaggtcactgca
ggtagcgcggaccgtatggttcatatttgggacacaaccactcggaggattctctacaag
ctcccggggcataaaggttcggttaatgagtgtgtgtttcacccatctgagcctatcatt
ggttcttgcagtagcgacaaagatatctacctgggagagatctaa

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