Brassica napus (rape): 106396342
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Entry
106396342 CDS
T04128
Name
(RefSeq) protein argonaute 5
KO
K11593
eukaryotic translation initiation factor 2C
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106396342
03036 Chromosome and associated proteins [BR:
bna03036
]
106396342
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106396342
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106396342
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
106396342
microRNA pathway
RISC loading complex
106396342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Piwi_N
Motif
Other DBs
NCBI-GeneID:
106396342
NCBI-ProteinID:
XP_013692158
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All DBs
Position
C4:complement(18776688..18781910)
Genome browser
AA seq
967 aa
AA seq
DB search
MSSRGGYGGAGRGGGGGRRSDQSSGPAAWPALQSSGVRGGRGRGNAGRGNAAPVASSSSS
PPSDAVSGVIGAGDVASSSSVREKPKASGSSDSGSSLGQELAEKVQITTAPPSSSKAVTF
PVRPGFGKLGKKVTIRANHFLVQVADRDLYHYDVSITPEVISKKVNRDVMTTLVKTYGES
HMAKKIPAYDGRKSLYTAGPLPFESKEFVVDLNGQKPTASSKRDRKFKVAIKLASRPDLH
QLQEFLRRKQRDAPYETIQVLDVVFRDLPSQKYVSVGRSFFDPSLGRRGELADGVEYWSG
YFQSLRLTQMGLSLNIDVSARSFYEPILVTEFIGKYLNLRDFSRPLRDSDRVKVKKALKS
LKVELAQFDFARSTKVSGISSCPISELRFTLEDNTQKTVVQYFAEKFNYRVKYPALPAIQ
SGSDSRPAYFPMEFCRIAEGQRYTKKLNERQVTALLRATCQRPEIRENSIKGMVKNNKYN
EIDLVRKEFGMSVTDQLATVEARVLPPPLLKYHESGREKMVNPRLGQWNMIDKKMINGAK
VASWTCVSFSTRIDRNLPQEFCKQLIDMCVSKGMQFNPQPAIPFISCQPQRIEEALCDIH
KRAPGLQMLIVILPDVTGSYGKIKRICETELGIVSQCCQPNQVRKLNKQYMENVALKINV
KTGGRNTVLDDAIRRRIPLISDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEITKY
RGLVSAQTHREEIIEDLYKLVQDPQRGPVHSGMIREHLIAFRRATGQKPQRIIFYRDGVS
EGQFSQVLLHEMIAIRKACASLEERYLPPVTFVVVQKRHHTRLFPAQHGNRETTDKSGNI
QPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPAHYHVLVDENGFTADALQMLTNNLCYTF
ARCTRSVSIVPPAYYAHLAAFRARYYMESENSDGGSSRSRNTTASTSAVVSLLPATKDNV
KDVMFYC
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctcgtggtggatacggcggtgctggtcgcggcggtggtggaggacgtcgatct
gaccagtcctctggtcccgctgcgtggccggcactgcaaagctccggcgttcgcggcggg
agaggtcgcggtaacgccggacggggaaacgccgctcccgtcgcttcgagctcttcgtct
cctccgtcggatgctgtttccggcgtcatcggagccggtgacgtcgcttcgtcgtcgtcc
gtacgtgagaaacccaaggcctctgggtcttcggattctggttcgtctctcggtcaggag
ttagcggagaaagtccagatcacgacggctcctccgtcgtcgtcgaaggcggtgacgttt
ccggtccggccagggtttggtaaattggggaagaaagtgacgattcgcgcgaatcacttc
ctcgttcaagttgcggatagggatctgtatcactacgatgtttcaatcactccggaggtt
atttcgaagaaggtgaacagggacgtgatgacaacgttggtgaagacatacggagaatca
cacatggcgaagaagattcctgcgtatgatggaaggaagagtctctacactgctgggcct
ctgccttttgagtctaaagagtttgttgtggatctgaatggccaaaaacccactgcttca
tccaagagggacaggaagttcaaagttgctataaagctggcctcaaggcctgatcttcat
cagttgcaggagtttctccgtcggaaacagagagatgctccatacgagaccatccaagtt
ttggatgttgtattcagggatctgccatcccaaaagtatgtttccgttgggaggtctttc
ttcgacccgagtttgggaaggaggggtgagcttgctgatggtgttgagtactggagcggg
tatttccaaagtctcagactcactcagatgggactgtctcttaacattgatgtgtctgct
agatctttctatgaacctatccttgtcactgaattcatcggcaagtacctgaatctgagg
gattttagcaggccactgagggactcggatcgtgtcaaggtgaagaaagcattgaagagc
ttaaaagttgaattggcccagtttgacttcgcaagaagtaccaaggtcagtgggatttcc
agctgtcccatcagcgagctaaggttcacgttagaggacaacacccaaaaaactgttgtg
cagtactttgctgagaagtttaattacagggtgaaatacccggctctacctgctatccaa
tcagggagtgactcaaggcctgcatacttcccaatggaattttgccggatagctgaaggc
cagagatacaccaaaaagctcaatgagaggcaggtgactgcgttgctgagagctacctgc
caaaggcctgaaattagagagaattcgatcaaagggatggtcaagaataataagtataac
gagattgatcttgtgaggaaggagtttggaatgtcagtgaccgatcagctagccacagtt
gaggctcgtgtcctacctccacctctgttgaaataccatgaaagtggcagagaaaaaatg
gtaaatccaaggctagggcagtggaacatgattgacaagaaaatgattaatggagcaaaa
gttgcatcttggacgtgcgtgagcttctctactcggattgaccggaatttaccacaggag
ttttgcaagcaattgattgacatgtgcgtcagcaaaggaatgcaattcaacccacaacct
gctattccgttcatctcttgccagcctcaaagaattgaggaagcactttgtgatatccac
aaaagggcacctggtcttcagatgttgattgtaatcttgcctgatgtcactgggtcttac
ggaaagatcaaaaggatatgtgaaacagagctagggatagtatcccagtgttgtcaacca
aaccaagttcgtaaactcaacaagcagtacatggaaaatgtggcattgaagattaatgtc
aagactgggggacggaacacagttcttgatgatgccattagaagaagaattcctctgatt
agtgatcgtccaaccataatctttggtgctgacgtgactcaccctcaacctggagaggac
tcgagtccttctattgctgcggttgtggcatccatggattggcctgagataaccaagtat
cgtgggctggtttctgcccaaactcatagggaagaaatcatcgaggacttgtataagctg
gtgcaggatcctcagcgagggccagtccactcgggtatgataagggaacatctcatcgca
ttcaggagggctacaggtcaaaaacctcagaggatcatattctatcgcgatggtgtgagt
gaaggacagtttagccaagtgctgttgcatgagatgattgctatacgtaaggcatgtgcc
tctctcgaagagcgttatcttccgcctgttacctttgtcgtcgtccagaaaagacaccac
acacgtttgtttcctgctcaacacgggaaccgtgagacgactgataagagtgggaatatt
cagccaggtaccgtcgtcgataccaaaatctgtcatcccacggagttcgacttctatttg
aacagtcacgctggcattcagggaacaagcaggcctgcacattaccacgtgcttgtggac
gagaacggtttcacagctgatgcgttacaaatgctcaccaacaacctctgctacacgttt
gcgagatgcacgagatctgtctcaattgtgccaccggcttactatgcacatttggctgca
ttcagggctcgttactacatggaaagtgagaactctgatggaggttcaagcaggagcagg
aacacaaccgcaagcacgagtgctgttgtctcgcttcttccagcaaccaaggataacgtc
aaggacgttatgttctactgctga
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