Brassica napus (rape): 106396653
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Entry
106396653 CDS
T04128
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106396653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106396653
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
106396653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
PRP4
Beta-prop_Vps41
Beta-prop_SPT8
WD40_like
Nbas_N
STELLO
Motif
Other DBs
NCBI-GeneID:
106396653
NCBI-ProteinID:
XP_048610397
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Position
C4:complement(2273164..2275829)
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AA seq
490 aa
AA seq
DB search
MVRHPPLARPPAFRPPQNGGAKADDERYVISEESRQVRERQERAMQELLRKRRAAAMAVP
TNDKSVRGRLRRLGDAITLFGEREMERRARLAQLMARLDIGGQLDRLLRAYEEEVEDEEE
EVQYLFFTEGPKELREARIDIAKYSIKRAAVRVQRAKRRRDDPDEDVDAETKWALKQAKG
MVLDCSSFGDDRPLTGCSFSRDGTILATCSLSGVTTLWEMPQVTNTIAILKDHKERVTDV
VFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHWDRLARVAFHPSGKYLGTTSFDKTWR
LWDVNTGAELLLQEGHSRSVYGIAFQQEGALAASSGLDSLARVWDLRTGRSILAFQGHIK
PVLSVNFSPNGYHLASGGEDSQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATA
SYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSSNEEED
QGGETMDIDL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggttcgacaccctccacttgcacgcccacctgctttcaggccaccacaaaacggtgga
gccaaagcagatgatgagcgttacgtgatatctgaagagagcaggcaagtcagagaaaga
caagaaagggcaatgcaggagttgctgagaaagcgccgcgctgctgctatggcagtgccg
acgaacgacaaatccgttagaggccggcttagacggcttggggatgccattactctattt
ggggaacgggagatggagaggagagctaggctggctcagcttatggccaggctcgatatc
ggcgggcagttggatagactgcttcgagcttacgaagaggaagtggaagatgaagaagaa
gaagttcagtacctttttttcactgaggggccaaaggagcttagagaggctagaatagac
attgctaaatattctatcaagagagctgctgtgagggttcagcgtgcgaagaggaggagg
gatgatcctgatgaagatgtggatgcagagactaagtgggctttgaagcaggctaaaggc
atggtccttgattgcagtagctttggagatgatcgtcctcttactggctgctccttctca
agagatggaacaatacttgccacgtgttctctaagtggagttactacgttatgggagatg
cctcaagtgacaaacacgatcgctatcttgaaagatcacaaagagcgtgtaactgacgta
gtcttctcccctgtggacgattgcctagcaaccgcttctgctgacagaactgcaaagctg
tggaaaaccgatggaacgctcctacaaacttttgaaggtcattgggaccgtcttgcacgc
gttgccttccacccatctgggaagtacctcgggacgacgagctttgacaaaacatggaga
ctgtgggatgtaaacacaggagcagagctgcttttgcaagaaggtcacagtcgcagcgtc
tacggaattgcgtttcagcaggagggggcattagcagcatcctctgggcttgattcgctt
gcacgggtttgggatctacgcactggtaggagtattctggccttccaaggacacatcaaa
ccggttctttcagtgaacttctctccgaatgggtatcacttagcatctggtggtgaggat
agtcaatgccgtatatgggatttaagaatgagaaagtcattgtacattataccagctcat
gctaacctcgtgtctcaagtgaagtatgaaccacaagaaggctacttcctggccactgcc
tcatacgatatgaaagtcaatatatggtcagggagagatttctcgcttgttaaaagctta
gcaggacacgagtcaaaagtcgcctctctagatatcactgcagacagctcgtgtatcgca
actgtatcacatgaccgtactatcaagctctggacaagcagtagcaacgaagaagaagac
caaggcggagaaacaatggacatagatctctaa
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