Brassica napus (rape): 106397523
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Entry
106397523 CDS
T04128
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106397523
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106397523
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
106397523
NCBI-ProteinID:
XP_013693570
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Position
C5:complement(4058318..4062086)
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AA seq
638 aa
AA seq
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MSSVKLQLQDKGNHVVMDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEESNRGYWDLV
WSGPGTAGTFDVIKGTKFEVIIENEEQIEISFTRKWDPSQEGKAVPLNIDKRFVMLRGSS
GFYTYAIYEHLKEWPAFSIAETRIAFKLRKEKFHYMAITDDRQRFMPLPDDRLPDRGQAL
AYPEAVLLVNPVEPQFKGEVDDKYQYSCENKDITVHGWICTEQPSVGFWLITPSHEYRTG
GPQKQNLTSHVGPTALAVFMSAHYTGEDLVPKFSEGEAWKKVFGPVFVYLNSSTDDDNDP
LWLWQDAKSQMNVEVESWPYSFPASDDYVKAEQRGNVVGRLLVQDRYVDRDFIAANRGYV
GLALPGAAGSWQRECKDYQFWTRTDEEGFFYINGVRPGQYNLYAWIPGFIGDYKYDDIIT
ITPGCYMYMEDLVYQPPRNGATLWEIGFPDRSAAEFYAPDPNPKYINKLYQNHPDRFRQY
GLWERYAELYPDKDLVYVVGSSDYSKDWFYAQVTRFYFCRKKDSKTYQGTTWQIKFELKD
IDKDHTYTLRAAIASATFAELQVRVNDATASPLFTSGLIGRDNSIARHGIHGLYWLFNVD
VAGSKLVEGENTLFLTQPRSVSPFQGIMYDYIRFEAPS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgttaaactccagttgcaagataagggcaatcatgtggtgatggataatggc
attgctcgtgttacattatcaaagcctgatggaattgttacaggtatcgagtataatggc
attgataacttgctcgaggttcttaatgaagaatccaacagagggtattgggacctcgtt
tggagtggaccaggaaccgctggtacatttgatgtaataaaaggaacaaagtttgaggta
ataatagaaaacgaagaacagattgagatttctttcacaagaaaatgggatccatcgcaa
gaaggcaaagctgtccctttaaacattgacaaaagatttgttatgcttcgtgggtcgtca
ggattctacacttacgccatctacgagcacttgaaagaatggcctgctttctcaatagct
gaaactagaattgccttcaagctcagaaaggagaagtttcattacatggcaataactgat
gataggcagaggttcatgccattgcctgatgaccggttaccggatagaggccaagctctg
gcttaccctgaagctgttctacttgttaatcctgttgagcctcaatttaaaggagaggtt
gatgataagtaccaatattcatgtgaaaacaaagacattactgtccatggatggatatgc
acggagcaaccatcagttggtttctggctcataactcctagccatgagtaccgaaccggt
ggaccccaaaaacagaacttgacatctcacgttggacccactgctcttgctgtgtttatg
agtgcacactacacaggggaagatttagtgccaaagttcagtgaaggagaggcatggaag
aaggtgtttggaccggtctttgtctatttaaactcctctactgatgatgataatgaccct
ctttggctctggcaagatgctaaatctcagatgaatgtggaagtagaaagctggccttac
agttttccagcttcggatgattatgtgaaagcagagcaacgtggtaacgttgttggcaga
cttctcgttcaagacaggtatgtagatagagatttcattgcagcaaatagaggttatgtt
ggtttggctctgcctggagctgctggttcatggcaaagagaatgcaaagattatcaattt
tggacaagaacagatgaagaagggttcttttacataaatggagtacgaccaggccaatac
aatctctatgcatggattcctggttttattggcgactataaatacgatgacatcatcacc
atcactccaggttgttacatgtatatggaagatcttgtatatcagcctccaagaaatggt
gcaaccttgtgggagattggctttccagatcgatcagccgcggagttttatgctcctgat
ccgaatccaaaatatatcaacaaactttatcaaaatcaccctgacaggttcagacaatat
ggattatgggaaagatacgccgaactataccccgataaagacttggtatatgttgttggc
tctagcgactatagtaaagactggttttatgctcaagtcactaggttttatttttgtaga
aaaaaggatagcaaaacatatcaaggaacaacgtggcaaatcaaattcgaactcaaagac
attgataaggatcacacatatactttacgagcagccatcgcatcggctacttttgccgaa
ctccaagtacgtgtaaatgatgcgactgcaagcccgttgttcacgagcggattgatcggg
agagacaactcgatagcaagacatggaatacatggattgtactggttgttcaatgttgac
gtggctggctctaagcttgtagaaggcgagaatacattgtttctcacgcagccaaggtcc
gtaagtcctttccaagggattatgtatgactacatccgattcgaagctcccagctaa
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