Brassica napus (rape): 106397725
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Entry
106397725 CDS
T04128
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106397725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106397725
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
106397725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
DEAD
Motif
Other DBs
NCBI-GeneID:
106397725
NCBI-ProteinID:
XP_022559092
LinkDB
All DBs
Position
C5:complement(2024342..2029884)
Genome browser
AA seq
1603 aa
AA seq
DB search
MDWIGSRIKFRNKERLEEVKKRKPAEEEARVSSRRKRKRKRRRRDHDSDLEDITETYHNN
NNLSADVTQSKSSGSVRRRRRRKDHDSDIEDITETYHKDHDSDLVDVTETYNTDHDSDLV
DVTVTYNNNLPAEVTDNNFSDGGGVKRTESEHNMEEEEEEGLFSVRVEEVDTSVPGPSGL
SIKDKLLSDEVLDLDVAKTVTDENLDLDMVKSAPSLPDEVLGLDVIKTVPELSDEIPDLD
VIKSVPSCSSESSIQQKLCDEIMDVIRSAASSSESSIKEKLSDDILVEDVVKSVPKLSDD
ILVEDVVKSVPSSSGSSNKGNESLDSDVVKSVTSSSGSEENTKDKCSSEVRGVEAAKPVP
AEIEIISDSESETKHSAKKKLSFAECSRVLDSTSESSEEEGASEANNNAKDDVTVESLSS
SSSSSSSSSSSALSLSSSSSSSSSSSEDEVSSKEVVGESDDDDCRKASSPIRKVSEVRRK
PLGRYKRAGPCSITPRKQLLKIRKLNHPEEEEEEDRFQAKPVKEFKRIQKLNLQEEEEED
RFQAKPVQEFKRLQKVNRQEEEEDRFQAKPVKEFKRIQKVNRPEEEEDRFQTKPRNEDKT
LQKFNLQEEEEDRFQDKPRNEDRRIQKFHCPEEEQQHKEVERVTKEHSNVVFTCVHCSKE
NTGIFDSDSCCFRPHAITRGEEDADDDDLNKNDYVPPERPSTSIPETENPKEVITPARLS
TSRPETVKAKEIQAPEMPSRQFSLKTSVPVTAAEGLSTPALVNEPVDNESASSISSGDES
GYESEPSLKEKEAAKSNNNNSGWRMLDGSRKEVDLFRLLVNSVRENDRLGEEEEDDILVS
SPEVEQPEEQDERKYDDDGLLIIRPPPLVEMFGMVEPAPPVVSEAQIEEDKMWEEVAFYT
NANEVDLQLHSEIEKEISADDSPGAACVKGNHELCLDLEIGLKCIHCCFVLREIRGLDVS
EWGERNTSGRRKNDRSEEEENSNFIGNLEFEANSNNNLKKRSESTQGTVWDKIPGVKSQM
YPHQQEGFEFIWRNLAGTIMLNELQDFENSEETGGCIMSHAPGTGKTRLTIIFLQSYLEC
FPNCKPVIIAPASLLLTWAEEFKKWNISIPFHNLSSLEFTGRENSAASKLLMQKNSSARS
NNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDEDKKTKGKPDKELEDIREILMDVPGL
LVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELGNVLGLARPKYLERLTS
TLKKSGMTVTKRGKKALGDKINNRGIEELKAVMLPFVHVHKGSILQKSLPGLRECVVVLN
PPDLQRRVLESIEVTHNQKTKNVFETEHKLSLVSVHPSLVSHCKLTGKESLTIDEALLAQ
LKKVRLDPNQSVKTRFLMEFIKLCVVIKEKVLVFSQYIDPLKLIMKHLVNWFKWTEGEEV
LYMHGKLEQKQRQTLINEFNDPKSKAKVLLASTKACSEGINLVGASRVILLDVVWNPAVE
RQAISRAYRIGQKRIVYTYHLVAKGTPEGTKYCKQAQKDRISELVFACSSRPDKGKEKIA
EAVTEDKVLDTMVKHLNLGDMFDNLIVQPKEADLVEGFSILMP
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atggattggattggttcaagaatcaagtttaggaacaaagagcgtcttgaagaagtgaag
aagaggaaaccggcagaggaagaggctcgcgtgtcttctcgccggaaacgaaagcggaag
agaagaagaagggaccatgattctgaccttgaagacatcaccgagacttaccacaacaac
aacaatctctctgccgatgtaactcaaagcaagtcctctggtagcgtaagaagaagaaga
aggagaaaggaccatgactctgacattgaagacatcaccgagacttaccacaaggaccat
gactccgaccttgtagatgtcaccgagacttacaacacggaccatgactcagaccttgta
gatgtcacagtgacttacaacaacaatctccctgctgaggtaactgataacaacttctct
gatggtggtggtgtaaaaagaaccgagtctgaacacaacatggaggaggaggaggaggag
ggtttgtttagtgttagggttgaggaagtagacacatcagttccgggcccctcagggttg
agtattaaggataagttgttgtctgatgaggttttggatttggatgtggctaaaacagtt
actgatgagaatcttgatttggatatggtcaaatcagctccaagcttgcctgatgaggtt
ttaggcttagatgtgatcaagacagttccagagttgtctgatgagattccggatttggat
gtgatcaagtcagttcctagctgctcctctgagtcaagcattcagcagaagttgtgtgat
gagatcatggatgtgattagatcagctgcaagctcctcagagtcaagtattaaggagaaa
ttgtctgatgacattttggttgaggatgtggtcaaatcagttccaaagttgtctgatgac
attttggttgaggatgtggtcaagtctgttcctagctcctctgggtcaagtaacaagggg
aatgagagtttggattctgatgtggtcaaatctgttacaagctcctcagggtcagaagag
aacacaaaggacaagtgttcctctgaggttagaggagtggaagctgcaaaaccagttcct
gctgagatagagatcatttcagattctgagtctgaaaccaaacattcagccaagaagaag
ctttcttttgctgagtgtagcagagtcttagactccaccagtgaaagcagcgaggaagaa
ggagctagtgaagccaataataacgctaaagatgatgtaaccgtggagtctttgtcttct
tcttcatcatcttcttcttcttcttcatcttcagctttatctttatcttcctcttcctcc
tcctcctcctcctcaagtgaagatgaagtcagttcaaaggaggtggttggagaatcagat
gatgatgattgtagaaaggccagttcaccaatcaggaaagtatctgaagtgagaaggaag
cctttgggaaggtataaaagagctggtccttgctctatcacgcctagaaaacagttactg
aagattcggaaactaaaccatccagaagaagaagaagaagaagataggtttcaagccaag
cctgtaaaagagttcaaaaggattcagaagcttaaccttcaagaagaagaagaagaagat
agattccaagccaagcctgtacaagagttcaaaaggcttcagaaggttaaccgtcaagaa
gaggaagaagatagattccaagccaagcctgtaaaagagttcaaaaggatccaaaaggtt
aaccgtccagaagaagaagaagatagatttcaaaccaagcctaggaatgaggacaagact
cttcagaagtttaacctccaagaagaagaagaagatagatttcaagacaagcctagaaat
gaggacaggaggattcagaagttccactgtccagaagaagaacaacaacataaagaagtt
gaaagagtaacaaaggagcatagcaatgtggtgttcacttgtgttcactgtagcaaagag
aatacaggaatctttgattcagacagctgttgcttcagaccacatgctatcacaagaggt
gaagaagatgctgatgatgatgatctgaacaaaaatgattatgttccgcctgagaggccc
tccacatccatacctgaaactgagaatccaaaagaagtcataacacctgcaagactgtcc
acatcaagacctgaaactgtgaaagcaaaagagatccaagctcctgaaatgccgtcaaga
cagttttcactgaagacaagtgtgcctgttacagctgcagaaggattatccacgcctgct
ttggtgaatgagccagtggataacgagtctgcttcttccatcagctctggagatgaatct
ggatatgaatctgagccttcacttaaagagaaagaggcagccaagtctaacaacaacaac
tccgggtggagaatgctggatgggagccgtaaagaagttgatctcttcaggcttcttgtg
aactctgtcagggagaatgatcggttaggggaagaagaagaagatgacatacttgtttct
tcacctgaagtagagcaacctgaagaacaagatgaaagaaaatacgatgacgacggcttg
ctaatcatcaggccaccaccactggtggagatgtttggcatggtggagcctgcaccaccg
gtggtttccgaggcgcagatagaagaagataagatgtgggaagaggtggcgttttacact
aatgcaaacgaagtcgatctccagcttcattcagagattgagaaagagatatcagctgat
gatagtccaggagcagcttgtgtaaaagggaatcacgaactttgtctagatcttgagatc
ggtttgaagtgcatacactgctgctttgtgttgagagagatcagaggactagatgtatct
gaatggggagagaggaacacaagtggaaggaggaagaatgacagatcagaagaggaagaa
aacagcaacttcattgggaaccttgagtttgaagctaacagcaataacaatttaaagaaa
agatctgaatctactcaagggactgtttgggataagatcccaggcgttaaatctcagatg
tacccacaccagcaagaaggttttgagttcatctggaggaacttggctggtaccattatg
ctgaacgagcttcaggactttgagaacagtgaagaaactggaggatgcatcatgtcacac
gctccagggacagggaagactcgcctcaccatcatcttccttcagtcttacttggagtgc
ttccctaattgcaaaccagtgatcatcgctcctgcaagcctgcttctcacatgggctgaa
gagttcaagaaatggaacataagcattccctttcacaatctcagcagcttggagttcact
gggagagagaactcagctgcttccaagctcctgatgcagaagaactcaagcgctagaagc
aataatgagataaggatggtgaagatatactcttggataaaatccaagagcatacttggg
atcagttacaacctctacgagaagcttgcaggagttaaagacgaggacaaaaagacaaaa
gggaaaccagacaaggagctggaagatatcagagagatactcatggatgtacctggactg
cttgttcttgacgaggcgcatacccctaggaaccagagaagctgtatatggaagacactg
tccaaggtagagacacagaaacggatcttgctctctgggacgcctttccagaacaacttc
ttggagcttgggaacgtcttgggccttgcgaggcctaagtacctagagaggctcacgtcc
acgctcaagaagagtgggatgacagtaaccaagagagggaaaaaagctttgggggataaa
atcaacaaccgtgggatagaggagcttaaggctgtgatgcttccctttgtgcatgttcac
aaaggaagcattcttcagaagagcctccccggtttgagagagtgtgttgtggtgttaaac
cctcctgatctccagaggagagttcttgaatcaattgaagtcacacacaaccagaagacc
aagaatgtgttcgagactgaacacaagctatctctggtctcggttcatccttctctcgtc
tctcactgcaaactcaccgggaaagagagtttgactattgatgaagccttgcttgcgcag
ttgaagaaggtgaggcttgatccaaaccaaagcgtgaagacaaggttcctcatggagttc
atcaagctgtgcgttgtgatcaaggagaaagtgcttgtgttcagccagtacattgaccct
ctgaagctgataatgaagcatttggtgaactggtttaaatggaccgaaggggaagaggtg
ttgtacatgcacgggaagctcgagcagaagcagagacaaaccctgatcaacgagttcaac
gatcccaagtccaaggccaaagtgttgttagcttcgacgaaagcgtgctctgaagggatc
aatcttgtgggagcgtcgagggtgatactactagatgttgtgtggaaccctgcggtggag
agacaagctataagccgtgcttatagaatcggacagaagaggattgtttacacgtatcat
ttggttgctaaaggaactcctgaggggactaagtattgtaagcaagcgcagaaggatagg
atctcggagctggtgtttgcgtgttcttcgaggcctgataaggggaaagagaagattgct
gaagctgtgactgaggataaagtgttggacactatggtgaagcatctgaaccttggggat
atgtttgataatctcattgttcaaccaaaggaagctgacttagttgaaggcttcagcata
ctcatgccatga
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integrated database retrieval system
