Brassica napus (rape): 106397789
Help
Entry
106397789 CDS
T04128
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X2
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106397789
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106397789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
106397789
NCBI-ProteinID:
XP_013693870
UniProt:
A0A816LSB4
LinkDB
All DBs
Position
C5:48094953..48097693
Genome browser
AA seq
458 aa
AA seq
DB search
MRLKKKTWILIFSVFILQTFTYSKALDVTQYGAVGDGVTDDSQAFLKAWEDVCSGAGDGQ
LIIPAGMAFMLQPLKFEGSCKSTPIVVQILGNLVASSRGKWKGDKDQWILFSDIEGLVVE
GNGELNGQGSSWWEHKGSSRPTALKFKSCNNLRLSGLTHVDSAMAHIHINGCNDVTISNL
RINAPESSPNTDGIDVAVSSNVIIQDCVIATGDDCIAINSGTANIRISGIDCGPGHGISI
GSLGKDGEIASVEDVCVQNCNFRGTMNGARIKTWPGGSGYARRITFNGITLDNVENPIII
DQHYNNGDSDKSTDDKSSAVEVSKVVYSNFVGTSRSEYGVSFRCSTRAPCTEIFLKDVKI
ETASSGMGQVAQGQCLNVRGGVSTLAVPGLECLALSTDMLSWGTMPEQACMLPQQSVQPN
TRPLQDPLWVYGSRGQRLGVYSVVLTSLISFGFSYVLG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttaaagaagaagacttggatcttgattttctcagtgttcatcctccagaccttc
acatattcgaaagctttggatgttactcaatatggagctgttggagatggagttacagac
gattctcaggcgttcttgaaagcctgggaagatgtctgtagcggggcaggagatgggcag
cttatcattccggcaggaatggcatttatgttgcagcccttgaagtttgagggttcttgc
aaatcgacccctattgttgttcagattttgggcaatcttgttgcatcaagtagaggaaaa
tggaaaggagacaaagatcaatggattctcttctcagacatagaagggcttgtggttgaa
ggtaacggcgaattaaacggccagggttcgagctggtgggaacacaaaggcagttctaga
ccaaccgcattgaagttcaagagctgcaacaatcttagacttagtggcttaactcacgta
gatagtgcgatggcacacattcacataaacggttgcaacgatgtaaccatctcaaatctc
cggataaatgcacctgaatcaagtcctaacaccgatggaatcgatgtagcggtttcatct
aatgttatcatccaggattgcgtaatcgccactggtgacgattgcattgcgattaactcg
gggacggctaacatcagaatatccggtatagattgcggaccaggccatggaataagcata
ggaagcttaggaaaagatggagagatagcttcagtggaggatgtatgtgtccaaaactgt
aactttagaggaactatgaatggagctaggatcaaaacctggccgggaggatctggttac
gcaagaaggattactttcaatggaattactctagataatgtcgagaatcctatcataatc
gatcagcattacaacaatggagattctgataagtccacagatgataagtcctcggcggtg
gaagtgagcaaagttgtgtatagtaacttcgtggggacgtccagatcagagtacggtgtt
agctttaggtgcagcacgagagcaccatgcacagagatttttctgaaagatgtgaaaata
gaaacggcatcgtcaggaatgggacaagtagcgcaaggacagtgtttaaacgtgagaggt
ggtgtgtctacacttgctgtaccaggtttagagtgtttagcactttctacagatatgttg
tcatgggggacaatgccggaacaagcttgtatgttgccgcagcaatcagtgcaaccgaac
acacgaccgttgcaagatccattatgggtttatggaagcagaggacaacgattaggagta
tatagtgtcgtattaacttcattaatctcttttggttttagttatgttttaggttag
DBGET
integrated database retrieval system
