Brassica napus (rape): 106399090
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Entry
106399090 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106399090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106399090
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106399090
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106399090
Complex C
U5 SnRNP specific factors
106399090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
AAA_11
Motif
Other DBs
NCBI-GeneID:
106399090
NCBI-ProteinID:
XP_048618562
LinkDB
All DBs
Position
C7:27306545..27314944
Genome browser
AA seq
2186 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTSENRPRDTHEPTGEPETLWGKIDPKSFGDRVA
KGKPQELEDKLKKSKKKERDVVADDTVSARQSKRRRLREESVLTDTDDVVYQPKTKETRA
AYEAMLSLIQQQLGGLPLNIVSGAADEILAVLKNDAVKNSEKKAEIQKLLNPMPDQIHQV
FDQLVSIGKLITDFQEGGDSGGGKENVDEGLDDDVGVAVEFEDNEEDGEESDPDMVQEED
DEEDEEPQKTGGMQVDAGINEEDAGDANEGTSLNVQDIDAYWLQRKISQAYEQQIDPQQC
QVLAEELLKILAEGDDRDVENKLLMHLQFEKFSLVKFLLRNRFKIVWCTRLARAEDQEER
NRIEEEMRALGLELAAIVDQLHATRATAKEREENLQKSINEEARRLRDETVGDGGRGRRD
VTDRDLESGWLKGQRQMLDLESLAFDQGGLLMANKKCDLPAGSYRTHGKGYDEVHVPWVS
KKVDIGEKLVKITEMPGWAQPAFKGMQQLNRVQSKVYDTALFKADNILLCAPTGAGKTNV
AMLTILQQIESSRNEDGTLNHGKYKIVYVAPMKALVAEVVSNLSNRLKDYGVTVRELSGD
QSLSGKEIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIV
ARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLGQQYIGI
SVRKPLQRFQLMNDLCYEKVVDGAGKQQVLIFVHSRKETAKTAQAIVDTAMAKDTLSRFL
KEDSASREVLLSQIELIKNGDLRKLLPYGFAIHHAGLTRGDREIVEALFGEGHVQVLVST
ATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDEYGEGIIITG
YSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAKEACHWLGYTYLYIRMVRN
PTLYGLAPDALVKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY
ISHGTIATYNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKETL
EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKAL
NLSKMVGKRMWSVQTPLRQFHGIPNEILMKLEKKDLVWERYYDLSSQELGELIRSPKMGR
PLHKFIHQFPKLVLAAQVQPITRTVLRVELTITPDFQWDEKIHKYVEPFWIIVEDNDCEK
ILHHEYFLLKKQYISEDHTLNFTVPIFEPLPPQYFVRVVSDKWLGSQTVLPVSFRHLILP
EKYPPPTELLDLQPLPVTALRNPNYERLYQDFKHFNPVQTQVFNVLYNTNDNVLVAAPTG
SGKTICAEFAVLKNHQEVLLRQEDDTKRQSGPDATMRVVYIAPKEAIAKEQFRIWERKFG
KVLGLRVVELTGETALDLKLLEKSQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHL
IGEGQGGTVLEVIVSRMRYISSQGDNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPG
VRPVPLEIHIQGVDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRTHVRLTAVDL
MAYSHIDNPQSPDFLLGKLEELEDFVDELREKTLKETLRHGIGYLHEGLCSQDQEIVTQL
FEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYAVSDLLQMMGRASRPL
LDNAGKCVIFCHAPRKEYYKKFLYEAFPVESHLQHFLHNNFNAEVVAGVIENKQDAVDYL
TWTLMYRRLPQNPNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCIEIEDEMDLSALNL
GMISSYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDRVRRLINHQ
RFSFENPNCTDPHVKANALLQAHFSRQSITTNLEMDQREVLLSATRLLQAMVDVISSNGW
LNLALLAMEASQMVTQGMWERDSMLLQLPHFTKDLAKRCQENNIETVFDLVEMEDEERQE
LLKMKDTELLDIARFCNRFPNIDLTYEVVGSEDVTAGKEVTLQVMLERDMEGRTEVGAVD
APRYPKTKEEGWWLVVGDTKTNQLVAIKRVSLQKKAKVKLDFQVPSEAGEKSYTLYFMCD
SYLGCDQEYAFSVDVKESGAEDQMEE
NT seq
6561 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacttgggaggcggtgcggaagctcatgctagattcaagcagtatgagtacaga
gccaactccagcttggtgctaaccagtgagaatcgtcctcgcgacacacacgagcctacg
ggagagcctgagactctttgggggaagattgatcccaagtcttttggagatagagttgct
aaggggaagcctcaggagctggaggataaacttaagaagtcgaagaagaaggagcgtgat
gttgttgcggatgatactgtttctgctcggcagagcaagaggcgtcggctcagggaagag
agtgtgctcaccgatactgacgacgtggtttatcagcccaagactaaggagacgagggct
gcttatgaggcaatgcttagtctgattcagcagcagctgggtggtttgcctctgaatatt
gttagtggtgctgcggatgagatcttggctgttctcaagaacgacgcagtgaagaactct
gaaaagaaggcggagattcagaagctgctgaaccctatgcctgatcagattcatcaggtt
tttgatcagcttgtttccattgggaaattgatcaccgactttcaagagggtggtgattct
ggtggcggtaaagaaaatgtagatgaggggcttgatgatgatgttggtgtggctgttgag
tttgaggacaatgaagaagatggcgaggagagtgatcctgatatggtacaggaggaagat
gatgaagaggatgaggaacctcagaaaactggaggtatgcaagtggatgcagggataaat
gaagaggatgcaggagatgccaatgagggcaccagtctgaacgttcaggatattgatgct
tactggctccagagaaagatatctcaggcttatgaacagcagattgatccgcaacagtgc
caagtactagctgaagagctgcttaagatactcgctgaaggggatgatagggatgttgag
aacaagctgcttatgcatcttcagtttgaaaagttcagcctcgttaagtttctgctgcgg
aaccgttttaaaattgtgtggtgtactcgtttggctagggcagaggaccaggaagagagg
aacagaattgaagaggagatgagagcgttgggtctggaactggcagcaattgtggatcag
ttgcatgcaacaagagcaacagcgaaagagagggaggagaacctgcagaaaagtattaat
gaagaggcccgacgtctgagggacgaaactgttggagatggaggtcgaggcaggagagat
gttactgatagagatttagagagtggttggttgaagggtcagcgtcagatgctggacttg
gagagcttggcttttgaccaaggtggtctcctgatggcgaataagaagtgtgaccttcca
gctggctcctacagaactcatggcaaggggtatgatgaagttcacgtgccatgggtttct
aaaaaggtggatatcggtgagaagcttgtgaaaatcaccgagatgccaggttgggctcag
ccggcttttaagggaatgcaacagctgaacagggttcagagcaaagtgtacgatacagcg
ctatttaaggcagataacatacttctttgtgctccaactggtgctgggaaaaccaacgtt
gccatgctcaccatactgcagcaaattgagtccagtaggaacgaagatggaacactcaac
catggaaagtacaaaattgtgtatgttgcacccatgaaagccctagttgctgaggttgta
agtaacctgtctaatcgtctgaaggattatggagtcactgtgagggaactcagtggggat
cagtccctcagtgggaaggaaattgaggagacccagataattgtcaccacaccagagaag
tgggatatcatcacaaggaagtctggtgatcgcacttacacccagcttgtgagacttctt
ataatcgatgagatccatcttcttcatgataatcgagggcctgtgcttgaaagcattgtc
gctaggactctgaggcagattgaaaccacgaaggagaatattcgcttggtgggtttgtca
gccacactgccaaattacgaagatgtggccttatttttgcgggttgatcttaagaaaggg
ttgtttaaattcgaccgcagctacagaccggtgcctcttggtcagcagtatattggaatc
agtgtgagaaaaccattgcagaggttccagctgatgaatgatctttgctatgagaaagta
gtggatggtgctggaaagcaacaggttcttatttttgttcactcgaggaaggaaacggca
aaaactgcacaagcaatagtggacaccgcaatggcgaaggatacactcagcagattcttg
aaagaagacagtgcaagtcgtgaagttcttctgagtcagattgaacttataaagaacggt
gatctgaggaaacttctgccttacggttttgctattcatcatgctgggttaacaaggggt
gatcgtgagatagttgaggccctttttggtgaagggcatgtgcaagtcttggtttccaca
gcaactcttgcatggggtgtgaatctgcctgctcatactgtcataatcaaaggaacacag
gtctataatcctgagaaaggagcgtggatggaactcagtcccctggatgttatgcagatg
cttggtcgtgctggaagacctcagtatgatgaatatggggagggtataattatcactggc
tacagcgagctgcagtattatctgtctttgatgaatgagcaactacctattgagagccag
ttcatttccaaacttgctgatcagcttaatgctgaaattgttcttggaactgtccagaat
gctaaagaggcttgccactggcttgggtatacgtatctctatatccgtatggttcgtaat
ccaacgctgtatggtttagcgcctgatgcccttgtaaaagacgtagtcttggaggaaaga
agagctgacctgatacactcagctgctactatcttggacaaaaacaacttggttaagtat
gacaggaaaagtggatatttccaagttactgatttgggaaggattgctagctactactat
ataagtcatgggaccatagctacgtacaatgagcatttgaagccaacgatgggtgatata
gatctttatcgtctgttctcactgagtgaggagttcaagtatgtgactgttcggcaagat
gagaagatggaactggccaaacttctggatcgtgtcccaattccgatcaaggaaacactg
gaggagcccagtgcaaagattaatgttttgctacaggcatacatttcacagctaaagctt
gagggtctttctttgacatcagacatggtttatataactcagagtgctggacgtcttgta
cgagctctctatgaaattgtattgaagcgcggatgggctcaactggctgagaaagctctg
aacttgtctaaaatggttgggaagaggatgtggagtgtccagacacctctccgtcagttt
catggaattcctaatgagattttgatgaagttggagaagaaggatttggtgtgggagagg
tactatgacctgtcgtcacaggagctaggagagcttattcgtagtcctaagatgggcaga
ccgcttcacaagttcatccaccagttcccaaaattggttcttgcagcacaagttcagcct
attactcgaactgttctgcgggtggagctcacaattacaccagacttccagtgggacgag
aaaattcataaatacgtggagccgttttggatcattgtggaagacaatgattgtgagaag
atccttcatcatgagtattttctattgaagaagcagtatatcagtgaggatcacaccttg
aacttcactgtcccaatctttgaaccactgccacctcagtactttgtccgagtggtttca
gacaagtggcttgggtcgcagactgtgttgcctgtatcttttagacaccttatacttcca
gaaaagtacccgccacctacagagctactggacttgcagcccctccctgtcacagcgctt
aggaatccgaattatgagagactctatcaggatttcaagcatttcaatccggtgcagact
caagtctttaatgttttgtataacactaacgataatgtgttggttgctgctccaacggga
agtgggaagactatatgtgctgagtttgctgtattgaagaatcatcaagaagtactccta
aggcaggaagatgatactaaaaggcaaagtggacctgatgctacaatgcgtgttgtctat
attgctccgaaagaggctattgctaaggagcagtttcgcatctgggagaggaagtttggg
aaggttcttggtttacgggttgttgagctgaccggggagacagcgttggatcttaagctg
ctggagaaaagtcagataattataagtactcctgagaaatgggatgctctgtctcgcagg
tggaaacagagaaaatacgtacaacaggttagtcttttcattgtggacgagcttcatcta
attggtgaaggtcaaggtggtacagtgctggaggtgatagtctctagaatgagatatatt
tctagtcagggtgataataagattaggattgttgcgctttctacttcccttgcaaatgcg
aaagatcttggggagtggattggggccagttctcacggcctattcaatttccctcctggt
gtccgtcctgttccactggagatccacatacaaggagtggatatatccagttttgaagcc
aggatgcaggcaatgaccaagccaacctacaccgccatagtccagcatgccaagaacaag
aagccggctatagtttttgtcccaacccgtacacatgtccgcttgactgctgtggatctg
atggcttactctcacattgacaacccacagagccctgatttcctgttagggaaactagaa
gaacttgaggattttgttgatgaactgcgcgagaaaacattgaaggagacactgcgccat
ggtattgggtacttgcacgagggtttatgcagtcaagatcaggagatcgtgacacaactc
tttgaagctggacggattcaggtttgtgtgatgagcagttcattgtgttggggcactcca
ttaactgcacatctggtggtggtgatggggacgcagtactacgatggaagggagaattca
cactcagattatgcagtctctgatttgcttcagatgatggggcgtgctagccgacctcta
cttgacaatgctggaaagtgtgtgatattctgccatgctcctcgaaaagagtattacaag
aagtttctttatgaagccttccctgtggaaagtcatctccagcatttcttgcataataat
ttcaatgcagaagtggttgctggggttatagagaacaagcaagatgcagttgattatctt
acatggactttgatgtacaggaggcttccccagaatcctaactactacaatcttcaagga
gtgagccacagacatttgtctgatcacttatcagagctggttgagaacaccttgtctgat
cttgaagccagtaagtgcattgagatagaggatgagatggacctctctgctctcaacctt
gggatgatttcatcctactattacatcagttacaccaccatcgagcgcttcagttctctt
ctgtcttctaaaaccaagatgaagggacttcttgagatcttaacatcggcttcagagtac
gacatgatcccaataaggcctggcgaagaggacagagttaggaggctcatcaatcaccag
aggttctcgtttgaaaacccaaactgcacagatcctcatgtgaaagcaaacgctcttctt
caggctcatttctcgaggcaaagcattaccacgaacttggaaatggatcagcgtgaggtc
cttctatcagcaaccagacttctacaggcgatggtggatgtgatatcaagcaatggctgg
ctgaatcttgctctgttagcaatggaagcaagccagatggtgactcaaggcatgtgggag
cgtgactcgatgcttttgcagctccctcacttcacaaaggacttggcaaaaagatgccag
gagaataacattgaaaccgtatttgatcttgtggagatggaggatgaagaacgccaagag
cttctcaagatgaaggacactgagctcttagacattgccagattctgcaaccgcttccca
aacattgacctgacttacgaggttgtgggcagtgaagatgtgaccgctgggaaggaggtg
acgttgcaggtgatgcttgagagagacatggaggggaggacggaagtgggagctgtggat
gcacccaggtatcccaagaccaaagaagaagggtggtggctggttgtgggggacaccaag
acgaaccagttggttgccatcaagcgtgtatccttgcagaagaaagcgaaggtgaagctc
gatttccaagtaccgagtgaagcaggagagaagtcgtacacactctacttcatgtgcgac
tcttacttaggctgtgaccaagagtacgctttctccgttgatgtcaaggagtctggcgct
gaagatcagatggaagagtga
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integrated database retrieval system
