Brassica napus (rape): 106399968
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Entry
106399968 CDS
T04128
Name
(RefSeq) probable pectate lyase 3
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106399968
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106399968
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106399968
NCBI-ProteinID:
XP_013695852
UniProt:
A0A078HPI4
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Position
C5:complement(7002681..7005115)
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AA seq
459 aa
AA seq
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MAAAFLNIGSYVFVFFLSSLATLAPQVQANIAVFDDYWTQRQGDALKQTLASFDPYPLNV
TNHLNYHVALALDTAESINSTRRELSQARRGRKMQNRRGKCVAHNPIDKCWRCDRDWEKN
RKKLAVCALGFGRRTSGGKDGPIYVVTDASDDELISPRPGTLRHAVTRDGPLWIIFARSM
VIKLQQELMMTSDKTIDGRGARVYIMGGSGLTLQFVNNVIVHNIYIKQIVPANGGLIRDS
EQHIGLRTRSDGDGINLFGATNVWIDHVSMTRCSDGMIDAILGSTAVTVSNSHFTDHQEV
MLFGANDKHEIDKKMQITVAFNHFGKRLEQRMPRVRFGTIHVVNNDYTHWEMYAIGGNMN
PTIISHGNRFIAPPNEQAKQITKREYTSYVDWKLWNWQSEGDYFLNGAYFVQSGKPNAWS
PKPKNPIPNKFAIRPKPGTMVRKLTMDAGVLGCKQGQAC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcgtttttgaatattggcagctacgttttcgtcttcttcttatcgtcatta
gccacattagcaccacaggttcaagccaatattgccgtcttcgacgactactggacgcag
cgtcaaggcgatgcgttgaaacaaactttggcctctttcgatccttatcctcttaacgtc
accaaccacttgaattaccatgtcgctttagcacttgacaccgcggaatcaatcaacagc
acaagaagagagctttcacaggcgagacgtggtcgtaaaatgcaaaacagaagaggaaaa
tgcgtagctcataacccgatagacaaatgctggagatgcgaccgtgattgggaaaagaac
cgtaagaaactagcggtctgtgccctcggattcggcaggagaaccagcggaggaaaagac
ggaccgatctacgtagtcaccgatgcctcagacgacgaacttatcagccctaggccagga
acattaagacacgcggtgacacgagacggaccgctttggatcatcttcgcaagaagtatg
gtcataaaactgcaacaggaactgatgatgacgagcgataaaacgatcgatggacgtgga
gctagggtgtacatcatgggaggttctggattaacgctgcagtttgtgaataatgtgatc
gtacacaatatctatatcaagcagattgttcccgcgaacggcggtttgatcagagactcc
gagcaacatatagggctcaggacaagaagtgatggtgatggaatcaatttgtttggagca
actaatgtttggatcgatcatgtctcgatgacgagatgttctgatggtatgattgatgcg
attctaggatccactgcagtgactgtctccaacagccacttcacggaccaccaagaggtg
atgctttttggggccaatgacaaacacgagatcgacaagaagatgcagataacagttgca
ttcaaccactttggtaagagactggaacagagaatgccccgggtcagattcggaacgata
catgtggtgaacaatgactacacacattgggaaatgtatgcaattggtggaaacatgaac
cctacaatcattagtcatggcaaccgtttcatcgctccgcctaacgaacaagccaaacag
atcacaaagagagagtacacttcttacgttgattggaaactttggaactggcaatcagaa
ggagattacttcctgaatggagcttactttgtgcaatccggtaaacctaatgcgtggagc
cctaaaccgaagaaccctatcccgaacaagtttgcgatccgacctaagccgggaacgatg
gtccgtaaactcaccatggacgcaggagtactgggctgcaaacaaggtcaagcctgctga
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