Brassica napus (rape): 106400444
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Entry
106400444 CDS
T04128
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106400444
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
106400444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
UTP6_C
Motif
Other DBs
NCBI-GeneID:
106400444
NCBI-ProteinID:
XP_013696257
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Position
A8:complement(22951115..22956109)
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AA seq
750 aa
AA seq
DB search
MGESQAMVAEGYNASAATVESNIDSSQSVANVSLVNGTGPEGGLTTSAENGTATDNVPVT
APGAGHVENAGSALSPEEERLWSIVRANSSEFNAWTALIEETERISQDNIAKIRKVYDAF
LAEFPLCYGYWKKYADHEARVGAMDKVVEVYERAVQGVTYSVDIWLHYCVFAINTYGDPD
TIRSLFERAVVYVGTDFLSSPLWDKYIEYEHMQQDWSRLAMIYTRVLENPIQNLDRYFSN
FKELAETRPLSELRSAEESATVAVSSDASETAPSESDGKADEGKSQADGTSEPSKLESAG
STDPEELKKYIGIREALYIKAKEFESKIIGFEMAIRRPYFHVRPLNVAELENWHNYLDFI
ESDGDFNKVVKLYERCLVACANYPEYWIRYVLSMGSSGSMDLADNALTRATQVFVKRQPE
IHLFAARLKEQNGDIAGARAAFQLLHSEISPGLLEAVIKHANMEQRLGNVDDAFSVYEQV
IAVEKGKDNSILLPLLYAQYSRFSYLVLRDAEKARKIIVEALDHVQPSKHFMEALIFFET
ILPPPRKIEYLDPLIENLIKPNVDTQNTASSTEREELSLIYIEFLGLFGDVESIKKAEDR
HCKLFLPHRSRSELKKRSADEFLSSDRTKLAKTYNETAPAQPVSNAYPNAPAQWSGGYAA
QPQAWPQPQAAPAQPQQWNPAYGQQQAAYGAYGGYPAGYAAPQAPTPVPQAAAYGAYPPQ
AYPAAATAPLAAPVQQPAAAPPQAYYNTYY
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaagccaggccatggttgctgagggctataatgcttctgctgctactgtggaa
tcgaatattgattcatctcaatcggtcgctaatgtatctttggtcaatgggactggacct
gaaggtggtttaactacgtctgctgagaatggaactgcaacagataatgtgcctgtaaca
gctccaggagcaggacatgtagagaatgctggttctgctctttcaccggaagaggagcgc
ttatggagtattgtaagggctaattcttcagagttcaatgcttggactgccctgattgaa
gagacagagaggatatctcaggacaatatagcaaagatccggaaggtgtatgatgctttc
ctagctgaattccctctgtgttatggctattggaaaaagtatgcggatcatgaggctcgg
gtgggggcaatggacaaagtcgtggaggtttatgaaagagcagtgcagggggtgacttat
tcagtagacatatggctgcattattgcgtttttgccatcaatacatatggagatccggac
acgatcagaagcctttttgaacgagctgtggtttacgttggaactgattttctgtcctct
ccattgtgggacaagtacatagagtatgagcacatgcagcaggactggagcagacttgcc
atgatttacaccagagtattggagaatcctattcaaaaccttgatagatacttcagcaac
tttaaggagctagctgaaacacgtcctctgtccgaacttaggagtgctgaggaatctgca
acagttgctgtttctagtgatgcttctgaaactgcaccatctgagtctgatggaaaggca
gatgaaggaaagtctcaagctgatggtacctctgaaccatctaagttggaaagtgctggt
tcaactgatcctgaggaactgaagaaatacattggcatcagagaagccttgtatatcaaa
gccaaagagtttgaatctaaaatcattggttttgaaatggctataagaagaccttatttc
catgtacggcctctcaatgtagcagagctggagaattggcataattatctggacttcata
gagagcgatggagacttcaataaggtggtcaagctctatgaaagatgtctcgtagcgtgc
gcaaactacccagaatactggattcgttatgtattaagcatgggatcaagtggaagtatg
gaccttgcagacaacgcccttactcgagcaactcaagtctttgtcaagagacaaccagaa
atccacctttttgctgctcgattaaaagagcagaatggggatatagctggtgctagagct
gcattccaattactgcattctgaaatttctcccgggcttcttgaagcagtaattaaacat
gcgaacatggaacaacgactaggaaatgtggatgatgctttctctgtgtatgagcaagtg
attgctgttgaaaaaggcaaagataactccatattactgccgctgctgtatgcgcagtat
tcaaggttttcatacttggttttacgtgacgctgagaaggctaggaagattatagttgaa
gcacttgaccacgtgcagccgtcaaagcatttcatggaagcactgatctttttcgagacc
attctgccaccaccaaggaagattgaatacctcgacccactcattgagaatttgataaag
ccaaatgtagacacccagaacactgcaagttccacagagagagaagagctttcattgata
tatatagagttcctgggtcttttcggagatgttgagtccattaaaaaggcggaagatcga
cattgtaagctctttttacctcacaggagcaggtcagagttgaaaaagcgtagcgcagat
gagtttctctcttcagataggacgaaactggccaaaacgtacaatgaaactgcgcctgct
cagccagtgtccaatgcatatccaaatgcaccggctcaatggtccggtggttatgctgca
cagcctcaagcttggccacaaccacaagcagctcctgcacaaccacagcagtggaaccct
gcttatggccagcaacaggctgcgtatggtgcatatggtggctatcccgctggctatgct
gctccacaagcaccaacacccgtgccacaagccgctgcttatggggcatatcctcctcag
gcatacccagctgcagctacagcaccattggctgccccggtccagcaacccgctgctgct
cctcctcaagcttactacaacacttactactga
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