Brassica napus (rape): 106400530
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Entry
106400530 CDS
T04128
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106400530
03015 mRNA surveillance pathway
106400530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106400530
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106400530
5.6.2.5 RNA 5'-3' helicase
106400530
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106400530
mRNA cycle factors
Common to processing body (P body) and stress granule
106400530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
SLFN-g3_helicase
nSTAND3
NAT10_TcmA_helicase
NPHP3_N
PhoH
ATPase
Viral_helicase1
AAA_16
SRP54
Ribosomal_S13_N
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
106400530
NCBI-ProteinID:
XP_013696340
UniProt:
A0A078HFJ9
LinkDB
All DBs
Position
A2:22034249..22041798
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AA seq
1221 aa
AA seq
DB search
MDSQPSDLFDTASQPDTAVDAYTFLEFNSQGDSEFDFPEFRSPNAWPTPSDSISAVEPSD
RGGGGVPAADHHSEASSPSSLSAKAGRGGGGGVSSSSQADALAAGIGNLNFEETGDDDGF
DYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKEVC
LHRDSPLGETILECYNCGCRNVFLLGFISATTDSVVVLLCRDPCLNVNALKDMNWDLSQW
CPLIDDRCFLPWLVKVPYEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDDEP
QPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVFPK
EENELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRANQGVPIDVNHGFC
VDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQLVRNPLPRRFGVPGLPE
LNASQINAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQL
AEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELS
SSDEKKYKNLKRATEREITQSADVICSTCVGAADLRLSNFRFRQVLIDESTQSTEPECLI
PLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHPAL
SEFPSNSFYEGTLQNGVTVNERLTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRT
EAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDS
FQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGL
LTHYKEHECLVEGPLNNLKQSMIQFQKPRKMYNDRRPFYGGGAGMIGNDNPNADRRGSRG
RAGGSYMPSGPPSGSRLHPAGYPIPRVPFSPFPGGPPSQPYAIPTRGPVGTGRGSSVGGH
LPHQQATQHNVGTIGPNVNFPLDSPNSQPSPGGPLSQPGYGSQAFRDGFMGGISQDFLGD
DFKSQGSHVPYNMGDYSTQGGYAVDYATQGAHGAFPGNFMNQNSQGGYSRFSGSNDFMSQ
EYMAHGAQGLFTQAGFIDSSQDDGQQNPFGVNNPNLQSQGLPNSLYSQPFSHYTQPLNLS
GPQQSQPPNQSSQNPKLPHNG
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcaaccgagcgatctctttgatacggcatctcagcccgatacggcggtggac
gcgtacaccttccttgaattcaattcccaaggcgattcggagttcgatttcccagagttc
cgttcaccgaacgcatggcctacaccgtctgattccatctccgccgtggagccttccgat
cgcggcggcggaggggtacctgccgcggatcaccattccgaggcctcctcgccttcttcc
ctgtctgccaaggccgggcgcggtggtggtggtggtgttagtagcagcagtcaggcggat
gcgttggctgcggggattggaaatttgaacttcgaggagactggcgatgatgatggtttc
gattacggaaagaatgatttcacggagcacgcgtgtaagtattgtggtatctcgaacccg
gcttgcgttgttaggtgtaatgtggcctcctgtagaaagtggttctgcaattcaagggga
aacacctccggctcccacatcgtcaatcatcttgttcgagccaaacacaaggaggtttgt
ctccatagagacagtccgttgggtgaaacaattctcgaatgctacaactgtggatgtcgg
aatgtctttcttctcggtttcatctcagcaactacagacagtgttgtcgtccttctctgt
agagatccttgtttgaatgtgaatgctctcaaggatatgaactgggacctaagccagtgg
tgtcccttgattgacgataggtgtttcctcccctggcttgttaaggttccgtatgagcaa
gagcagctgagggcacgacaaattagtgcacagcaaataaacaaaattgaggaattatgg
aagacaaatccggatgctacccttgaagaccttgaaaaacctggcgtagacgatgaacct
cagcctgttcaacctaagtatgaagatgcttatcagtatcaaaacgtgtttgctcctctt
attaaactcgaagcagattatgacaagatgatgaaagagtctcagagcaaggaaaacctc
acagttcggtgggatattggtctgaacaagaagcgtgttgcctacttcgtcttcccgaag
gaggaaaatgaattgcgattggtgccgggtgatgaactacgtctacgctactcaggagat
gctgctcatccagcttggcaatcagttggacatgtggtcaaactaactgcccaagaggag
gttgctcttgaactccgagctaatcagggagttccgatcgacgtgaaccatggattctgt
gttgattttgtttggaaaagtacaagctttgatcggatgcagggagccatgaaaaatttt
gctgtagatgaaacgagtgtgagtggttatatttaccatcagctattgggacatgaagtt
gaggcccagttggtccggaacccacttcctcgacgttttggggtaccaggtcttccagaa
ctgaatgcatctcagattaatgcggtgaagagtgtccttcagaagcccatcagtttgatc
caaggtccacctggcacaggcaaaactgtgacttctgctgcaattgtgtatcacatggca
aaacagggtcagggacaggttctcgtttgtgccccaagtaatgttgcagtcgaccagcta
gcagaaaaaattagtgctactggtttaaaggttgttcgactttgtgcaaagtcaagggaa
gctgtaagttctcctgttgagcatttgacacttcactaccaggtacgacatcttgacact
tctgagaagagcgagctgcataagctacagcaattgaaagatgaacaaggtgagctgtca
agcagtgatgaaaagaaatacaaaaatttgaaaagagcaacagaacgcgagataacccag
agtgctgatgtcatttgctctacttgtgttggtgctgcggatcttcggctgtcaaatttt
agatttagacaggtccttattgatgagtctactcaatctacagaacctgagtgtcttatt
cctttggtcctcggggtaaaacaggttgttcttgttggtgatcattgtcagcttggcccc
gtcattatgtgcaagaaagcagctcgtgctggcttggcacagtctctctttgaacgcctt
gtgcttcttggcattaaaccaattagattgcaggttcaatatcgtatgcatccagcgttg
tccgagtttccatccaatagcttctatgaaggaacactacagaatggagtcaccgttaat
gaaaggctaacaacagggattgatttcccctggcccgtgcctaatcggcccatgtttttc
tatgtccagctggggcaagaggagatcagtgctagtggaacatcatacctaaatagaacc
gaggctgctaatgtggagaaacttgtgaccgctttcttaaagagtggagttgtccccagt
cagattggagtgataactccatacgagggacagagggcatatattgttaattacatggct
agaaatggttctctccgacaacaactttacaaggaaattgaggttgccagtgttgattct
tttcaaggaagagaaaaagattacatcatattgtcctgtgtcagaagtaacgagcatcag
ggcattggattccttaatgatccacggaggctcaatgttgcactcacacgtgctcgttat
ggaattgttattcttggaaacccgaaggtccttagtaaacagcctctgtggaatggcttg
ctgacacattacaaggaacatgagtgcttagttgagggacctcttaataatttaaagcag
agcatgatacaatttcaaaaaccaagaaagatgtataatgatcgcagaccattttatggt
ggtggggctggcatgattggaaatgataatcccaatgctgacagaagaggcagccgtgga
agggctggtggttcttatatgccttctggcccacctagtggttcgagattacacccagct
ggctacccaatacccagggtgccattttcaccgtttcctggtggtcctccttctcagcca
tatgctattccaactcgtggacctgttggtactggtcgtggaagttcagttgggggccac
cttccccaccaacaagccacccagcataatgttggaactattggccctaatgtgaacttc
ccccttgatagtccaaatagccagccttcacctggtggtccgctatcccaacctggatat
ggaagccaagcattcagggatggttttatgggcggcatttctcaggatttcttaggtgat
gatttcaagagccagggatctcatgttccttacaacatgggcgactattctacacaggga
ggatatgcggttgattatgccacacaaggagcccatggagcttttcctggaaactttatg
aaccaaaattctcaagggggttattctcgtttcagtgggagtaatgatttcatgtcccag
gagtatatggcgcatggagcacaaggtcttttcacccaagctggctttatcgactcatct
caggatgatggacaacagaatccttttggtgtgaacaatcctaatcttcagtctcagggt
ctcccgaattcactctactcgcagcctttctcacactacacccagccactaaacctttca
ggcccacagcaatctcaacctcctaaccaaagctcacaaaacccaaaacttcctcacaac
ggctaa
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integrated database retrieval system
