Brassica napus (rape): 106400644
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Entry
106400644 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH2 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106400644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106400644
03012 Translation factors [BR:
bna03012
]
106400644
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106400644
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106400644
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106400644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
R3H
OB_NTP_bind
HA2_C
Ank_5
HA2_N
nSTAND3
Ank_2
AAA_19
AAA_22
ATPase
AAA_7
PhoH
Sigma54_activat
Sigma54_activ_2
AAA_11
Stb3
Motif
Other DBs
NCBI-GeneID:
106400644
NCBI-ProteinID:
XP_013696458
UniProt:
A0A816L3Z4
LinkDB
All DBs
Position
C5:2526727..2533420
Genome browser
AA seq
1368 aa
AA seq
DB search
MGKKMNRDQNTELSDSSRIWASKFLKEFRASGRDSHTFDNSLTNDVRGIIHQMCRKMGIR
SKSSGKGDQRRLTIFKRAPRPSSVSGSEKKKLKRVSFPPEAEPILQDLFTRYPPCDGDTR
ATSLGVYTGHFGRQRKWKDDFFGKPQMNKDDVRNKAASLSSRLANDKDFREIFGARTKLP
IASFREAITSAVESNQVVLIAGETGCGKTTQVPQYLLDHMWYSKRESCKIICTQPRRISA
ISVSERISWERGESIGNNVGYKVRLNSKGGRQSSVVFCTNGILLRVLVGKGGGSCVPDIT
HIIVDEIHERDCYSDFMLAIIRDFLPSNPHLRLILMSATLDAERFSEYFGGCPVVQVPGF
TYPVRTFYLEDVLSVLKSEKNHHLISDDSSIPDVKRDIKDEDEVALDEAIEMAWTNDEFE
ALLDLVSSEGSHEVYNYRQSSTWLTPLMVFAGKGRVNNVCKLLALGADCKLKSKEGMTAL
ELAEKEKQFEAAQIIREHTDNVQSNSQQEQVLLDKYMATINPEEVDVGLIVNLMRKLCRD
SEAGAVLVFLPGWEEISKTKERLLANPYFADSAKYNIICLHSRVPVEEQKRVFKRPPQGC
RKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLESSWVSKANAKQREGRAG
RCQPGICYHLYSKLRAASLPEYRIPEVRRMPVDELCLQVKMLDPSCNVNDFLQKLMDPPV
DRSIANALTTLKDIGALTPQEELTELGQKFGQLPVHPRICKMLYFAILVSCLDPALILAC
AADTKDPFTMPLEPGERRKAVAAKRELASLYGGHSDHLAIVAAFHYWKDAKRNGHSQEFC
SQYFVSPNAMKMLDNMRDKLQGELERHGLIPRNDSNCNLNAHDPGILRAVVAVGLYPMVG
KMCPPSMNNNRRSLVETITGAKVRVLSLSNMSSREEDEALIVFDEITRGDWDVHIRESTT
LRTIPLLLFAGEIAVAPTESCDADKSDDEKDNEEETVGDVMDIDKVGGRPGDKIMHAPEN
SVKVVVDRWLPFEMTALEIAQIYILRERLVASILFKVKHPQENLPPHLGASMYAIACILS
FDGLSKPSVPTVDMEPVASAVDATGLGDDPNTAMGESLFSNLADGNELLDLVTAPTEADS
AVKEPEKKRSRSKKHKSANMDSVNMGADLSTASDEAASAVEEPVKKRRRSKKRRSAKNLD
LASEQPELKLAKESDLGNMEESLPSNPVNGNELPDTNTVPAEDASAGEEPEKKRSRSSKK
RKSAKNLDLGNMEVKETFDLANNGNDQTELKPASKEKEIIPANHTNGNEQPDPQMESASA
ASEPEKKQSRSKRRKLANSSSSGNNTEENVPSTNNGNELLSSGLTEAA
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagatgaatagagatcaaaatacagaactctcagattcctctcggatttgg
gcctccaagttcctcaaggagtttcgcgcctccgggagagattctcacacatttgataac
agtctcacgaacgacgtacgtggcattatccatcagatgtgccggaagatgggtatccga
tcgaaaagttccgggaaaggggatcaaaggcgtcttacgattttcaaacgtgcacctcgc
ccctcttcagtttccgggagtgagaagaagaagctcaagcgtgtctcgtttccaccggag
gcggaacctattcttcaggatttgtttactcgctatccgccttgtgacggagatactaga
gcgacgtcactgggcgtatatactggacatttcgggagacaacgcaagtggaaagatgac
ttctttggcaaacctcagatgaacaaagatgatgttcgaaacaaggcggcgtctctgagt
tctagattggcaaacgacaaagattttcgggagatctttggagcacgaaccaagcttccc
atcgcatcctttagagaggccatcacatctgcagtggaatctaatcaggttgttcttatt
gctggtgaaactggttgtggcaaaactactcaggtgcctcaatatcttctagaccatatg
tggtatagtaagcgagaatcttgcaaaatcatttgcacccaaccacgtcgtatctcagct
atttcagtttctgaacgaatttcttgggaaagaggtgaatctatagggaacaacgtcggc
tacaaggtgcggctgaacagcaaaggtggaagacagtcatcagttgttttctgtacgaat
ggcattctgttgagggtgcttgtaggcaaaggcggtggtagctgtgttcctgatataact
cacattattgtggatgaaattcatgaaagggattgctactctgatttcatgttggccatt
ataagggacttccttccttcaaatcctcatctccgactgattctaatgagtgctactctt
gatgccgagaggttttctgaatatttcggaggttgtccggttgtccaagtgcctggattc
acttatccagtgagaaccttttatctggaagatgtgctctctgtcctgaaatcagagaag
aatcatcatctaatttctgacgactcgagcataccagatgtcaagcgtgatattaaagat
gaagatgaagttgctttagacgaagcaattgaaatggcgtggacaaatgacgagtttgaa
gctctcttagatctggtttcctccgaaggaagtcatgaggtttacaattacaggcaatca
tcaacctggctaacaccacttatggtctttgctggaaagggcagggttaacaatgtctgt
aagctcctcgcacttggcgctgactgtaagttgaagtccaaggaaggtatgacagcacta
gaattggccgaaaaagagaagcaatttgaagctgctcaaataatcagggaacataccgat
aacgtccagtccaattctcagcaagaacaagtcttacttgataagtatatggcgacaatc
aatccagaagaagtagacgtgggtcttatagtgaatttaatgaggaaattatgccgcgac
tcagaagctggtgccgttcttgtttttctacctgggtgggaggaaataagtaaaacgaaa
gagagattgcttgctaatccttattttgcagatagtgctaaatacaacatcatatgtcta
cactcaagggttccggtagaggaacagaagagagtttttaaacgtccccctcaaggttgt
cgcaaaatcgtgcttgcaacaaatattgctgaatcagcagtcactatcgatgatgtggtt
tatgtgatagatagtgggcggatgaaggaaaagagctatgatccttataatgacgtgtca
acgctagaatcttcttgggtttcaaaagcgaatgcaaaacagcgggagggtcgagcaggc
cggtgccaacctggaatttgttatcatctctattctaaacttcgggcagcctctttacct
gaatatagaatccctgaagttaggaggatgccagtagatgaactctgcttgcaggttaag
atgctggatccgagttgcaatgtaaatgatttcctccagaaattgatggacccgcctgtt
gatcgaagcattgcaaatgccttaaccacccttaaagacattggagcattgacaccacaa
gaagagctgacagaacttggacagaaatttggccagcttccagttcatcctcggatttgc
aagatgctttattttgccatattagtgagttgtctggacccagcacttattctggcatgt
gcagccgacaccaaggatccatttaccatgcccttggagccgggagaaagaagaaaagct
gttgccgcaaaacgtgaacttgcgtcgctttatggaggccacagtgaccaccttgcaatt
gttgcggcttttcattattggaaagatgcaaaaagaaatggtcattctcaggagttctgt
tctcagtacttcgtctctccaaatgccatgaagatgctggataatatgcgtgacaagctt
cagggggaacttgaaagacatgggctcattcctagaaatgactcgaactgtaatctgaat
gctcacgatccaggcattctccgtgctgttgtagcagtgggattgtaccctatggtggga
aaaatgtgcccaccttccatgaataataatagaaggtcactagtagagaccattacggga
gccaaagttcgtgtgctatcgctttcaaacatgtcctctagggaggaggatgaagcttta
attgtttttgatgagatcactcgaggagattgggacgtgcacataagagaaagcactact
cttcgcactataccgttgttactgtttgcgggagagatagctgtggctcctacagagagc
tgtgatgctgataagagtgatgacgagaaagacaacgaagaagaaactgtaggagatgtg
atggacatagacaaagtaggtggtaggcctggagataaaataatgcatgcaccggaaaat
tcagtcaaggtggtagtggatcggtggctgcctttcgagatgacagctcttgaaattgct
caaatttacatcttgagagagcgactagtggcatccattttgttcaaggtaaaacatcca
caagaaaatttgccgcctcatctcggagcttctatgtacgcaatagcttgtattctctca
tttgatggcctctcaaaaccttcagttccaactgttgatatggagcctgttgcttcagcg
gtagatgcaacaggtctcggagatgacccaaacactgcaatgggagagagcttgttttcc
aatctcgctgatgggaatgagctacttgacctagtcactgctccgacagaagctgattca
gcagttaaagaaccagagaagaagagatcaaggtccaaaaagcacaaatcagccaacatg
gattcggtgaacatgggagctgatttaagcactgcttcggatgaagctgcttcagcagtt
gaggaaccagtgaagaagcgacggaggtccaaaaagcggagatcagccaaaaatttggat
ttggctagtgagcaaccagagcttaagctggccaaggaatcggatttgggtaacatggaa
gagagcttgccttccaatcctgttaatggaaatgagctgcctgacacaaacactgttccg
gctgaagatgcttcagcaggtgaagaaccagagaagaagcgatcaagaagttccaaaaag
cgaaaatcagccaagaacttggatttggggaacatggaagtgaaagagacttttgatcta
gctaataatgggaatgatcaaacagaacttaagccagccagcaaggagaaagagatcatc
cctgcgaatcataccaatgggaatgagcaacctgaccctcaaatggaatctgcttcagcg
gctagtgaaccggaaaagaagcaatcaagatccaaaaggcgcaaattagcgaacagctca
agttcgggtaataacacggaagagaatgtgccttccactaataatgggaatgaacttcta
agcagtggtcttaccgaagctgcatga
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integrated database retrieval system
