Brassica napus (rape): 106400685
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Entry
106400685 CDS
T04128
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106400685
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106400685
microRNA pathway
RISC loading complex
106400685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
PAZ
DND1_DSRM
Helicase_C
DEAD
ResIII
Dicer_PBD
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106400685
NCBI-ProteinID:
XP_048613602
LinkDB
All DBs
Position
C5:complement(482086..489827)
Genome browser
AA seq
1863 aa
AA seq
DB search
MVMEDERSNKDVNKPSYWLDACEDISCDLIDDLVSDFDPSSVAVAESIVNNDFFGGIDHI
LDSIKNGGGLPNNEAPQLNPGDVTKENGLQRSGVKRDDKEEGDKNRKRARVCSYQSERSR
GVESRKRTRSYEDTGGGHNKRRDGYNYYRRDGRGYWERDKVGSNQLVYRSGTWEADHERD
VKKESRRKGDEKGEEEEKKGKPEEQRKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAG
KTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQD
FWDARRWQREFESKQVLVMTAQILLNILRHSIIRMESINLLILDECHHAVKKHPYSLVMS
EFYHTTSKDKRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKH
VPMPSEIVVEYDKAATMWSFHEKIKQMIAAVEEAAKASSRKSKWQFMGARDAGAKEELKQ
VYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVAQSFLTALQSDERVNFQVDVKF
QESYLSEVVSLLQCELVEGAAAEKAATECSKPVNGDVNDEIEEGELPDDHVVSGGEHVDE
VIGAAVADGKVTPKVQSLIKLLLKYQHTSDFRAIVFVERVVAALVLPKVLAELPSLGFIR
CASMIGHNNSQEMKSSQMQDTISKFRDGQVTLLVATSVAEEGLDIRQCNVVMRFDLAKTV
LAYIQSRGRARKPGSDYILMVERENVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSR
LISIDAVPGTVYKVETTGAMVSLNSAVGLIHFYCSQLPGDRYAILRPEFSMEKHEKPGGH
TEYSCRLQLPCNAPFEILEGPLCSSMRLAQQAVCLAGCKKLHEMGAFTDMLLPDKGSGQD
AEKADQDEEGEPVPGTARHREFYPEGVADVLKGDWILSGKEVCESSKLFHLYMYSVRCED
SGSSKDPFLTEVSDFAVLFGNELDAEVLSMSMDLYVARAMITKASLVFKGSLDITESQLS
SIKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTDSTKGINWELIEKITETTVWDNP
LQRARPDVYLGTNERTLGGDRREYGFGKLRNNIGLGQQKSHPTYGIRGAVASFDVVRASG
LLPVREAVERDVSQGKLMMADGCMVADNLIGKIVTAAHSGKRFYVDSICYDMSADTSFPR
KEGYLGPLEYNTYGDYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETILD
KTYYVFLPPELCVVHPLSGSLVRGAQRLPSIMRRVESILLAVQLKNLISYPIPTSKILEA
LTAASCQETFCYERAELLGDAYLKWIVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYA
LLKGLQSYIQADRFAPSRWSAPGVPPVYDEDTKDGGGGSSFFDEEQKQASSEDVFEDGEM
EDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKAAANHLMKWIGIHVEDDPEETEG
AVKPVSVPESVLKSIDFVGLERALKYEFAEKGLLVEAITHASRPSSGVSCYQRLEFVGDA
VLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIR
EFVKEVLTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSAAWKVFQPLLQ
PMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMA
QKLAARNALAALKEKEIAESKEKAANGNAGDESENGNKKNGNQTFTRQTLNDICLRKNWP
MPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAASLLLELLNK
TYS
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atggtaatggaggatgagcgtagtaataaggatgtcaacaagccttcttactggctagat
gcttgcgaggacatctcttgcgatctcatcgacgacctcgtctccgatttcgatccttcc
tccgtcgccgtcgctgagtccatcgtcaacaacgacttcttcggtgggatcgatcacatt
ctagacagtatcaagaacggtggaggcttgccaaacaacgaggctcctcagttgaatcct
ggagatgttaccaaggagaatggtttgcaaaggagcggcgttaagagagacgataaagag
gaaggagacaagaacaggaagagagctagagtttgtagttaccagagcgagaggagtaga
ggggttgagtctaggaaacggactcggagctacgaggatactggtggtggtcataacaag
agaagagatggttacaattattacagaagagacggtagaggctattgggagagggataag
gttggttcgaaccagcttgtttatcggtctggtacttgggaagctgatcacgaaagagat
gttaagaaagagagccgtagaaagggtgatgagaagggagaggaggaggagaagaagggt
aagcctgaagagcaacgcaaagagaaagttgtggaagagcaagcgaggcggtatcagttg
gatgtgcttgaacaagctaaagctaagaacacaatcgcttttcttgagaccggtgctggg
aagacacttatagccattctcttgatcaaaagtgttcataaggatttaatgagtcaaaac
agaaaaatgctctctgtgttcttggttcccaaagtgcctttggtttatcagcaagcggaa
gtgattcgtaatcagacttgttttcaagttggacattactgtggtgagatgggacaagat
ttttgggatgcgagaaggtggcagcgtgagttcgagtctaagcaggttcttgtaatgacg
gcgcagattcttttgaatatactgaggcacagtattatcagaatggaatcgattaatcta
ctgatcctcgacgagtgtcaccacgctgtcaagaagcatccttactcactagtgatgtca
gagttctaccacacaacgtctaaagataaaagacctgccatctttggcatgactgcttca
cctgttaatctaaaaggtgtttcaagccaagtagattgtgcgataaaaatacgaaatctc
gagaccaagttggattctacggtttgcacgataaaagatcggaaggaactagagaaacat
gtgccgatgccttcagagattgtggtggagtatgacaaagctgctacaatgtggtctttt
catgagaagataaagcaaatgatcgcagctgttgaagaggcggcgaaggcgagttcgagg
aaaagcaagtggcagtttatgggggctagggatgctggagctaaggaggagctgaaacag
gtttacggcgtctccgagagaacggagagcgatggagctgctaatttgattcataagctt
agagctattaattatactcttgctgagttgggtcaatggtgtgcttacaaggtggcacaa
tcgttcttgactgcattgcaaagtgatgagagggtgaatttccaagtggatgtgaagttt
caagaatcgtatctcagcgaggtggtgtcgctattgcaatgtgagcttgtggaaggagct
gctgctgaaaaggcggccacggaatgtagtaagccagtaaatggtgatgtaaatgatgag
attgaggaaggagagctccctgatgatcatgtggtctctggaggggagcacgttgatgag
gtaataggagccgcagtggctgatgggaaagttactccgaaagttcagtcgctgatcaaa
ctactcctcaagtatcagcacacatctgattttcgtgctattgtttttgtggagagagtc
gttgctgctttggttcttccaaaggttttagcggagctgccttctcttggtttcatacgg
tgcgccagcatgattggtcacaataacagccaggaaatgaagtcatctcaaatgcaggat
acaatttctaaattccgagatggccaagtgacactgttagtggccacaagcgttgctgag
gaaggtcttgatattaggcaatgtaacgttgttatgcgtttcgaccttgcaaagacggta
ctagcatacattcagtctcgtggtagagcaagaaagcctggttcagactacatactcatg
gttgagagggaaaatgtatctcacgcagcatttttaaggaatgctaggaacagcgaggag
acgctgcgaaaagaagcaatagaaaggactgatcttagtcacctcaaagatacatcgagg
ctaatctccattgacgctgtccctggtacagtttataaggtggagacaactggtgccatg
gtcagccttaactccgcggttggtctcatacatttctactgctctcagcttcccggtgac
aggtatgcgattcttcgtcctgagttcagcatggagaaacatgaaaagcctgggggacac
accgagtattcgtgcaggcttcagctcccttgcaacgcaccatttgaaatactcgagggt
cctctttgtagttcaatgcgccttgcacaacaggctgtatgtctagctggttgcaagaaa
ctgcatgagatgggtgcgtttacggatatgctgttaccggacaagggaagtggtcaagac
gctgagaaggctgaccaggatgaagaaggtgagcctgttcctggaactgctagacacaga
gagttctatccagaaggtgtagcagatgtacttaagggagattggatattatcaggaaag
gaagtatgtgagagctcaaagctattccatttatacatgtatagtgttagatgtgaagat
tctgggtcttcaaaagatccattcttaaccgaagtttcagatttcgcggttctttttggc
aatgagctggatgcagaggtattatcgatgtctatggatctttatgttgctcgagccatg
atcaccaaagcatctcttgttttcaagggatcactggatattacagaaagccagctatca
tctattaaaaagtttcatgtgaggttgatgagtatagtcttagatgttgacgtcgaaccc
tccacaacaccatgggatcccgcaaaggcctacttgtttgtccccgtgactgacagcacg
aaagggatcaactgggaactaattgaaaagataactgagaccactgtgtgggacaacccg
cttcagagagctcgtccggacgtgtacctcgggactaacgagagaactcttggtggggac
aggagggaatatgggtttggtaaactccgtaacaacattggattggggcagcagaaatct
cacccgacttatggtattagaggagccgttgcatcttttgatgtcgtgagagcttctgga
ttgttacctgtgagagaggcagtggaaagggatgtatcacaagggaaactgatgatggca
gatgggtgcatggttgcagataatctaatagggaaaatagtgacagccgcacattcaggg
aagcggttttatgtggactctatatgctacgatatgagtgcagacacatcattcccaagg
aaggaggggtatctaggtcctttggaatacaacacttatggtgactactacaagcaaaag
tatggagttgatttaaactgtaagcaacaacctttgatcaaaggacgaggtgtctcgtat
tgcaagaaccttctttctcctcggtttgaacagtcaggtgaatctgagacgatacttgat
aagacatattacgtgtttctaccacctgaactatgcgtggtgcatccgctttcgggttca
ctagtccgaggtgctcagaggttgccctctataatgagaagagttgagagcatattgctc
gctgttcaacttaaaaacttgattagttatcctattccaacttcaaagattctggaagcc
ttgactgcagcctcgtgtcaggagacgttctgctacgagagagccgaactcttaggagac
gcgtatctgaaatggatcgttagtcgttttctgtttctcaagtacccgcagaagcacgag
ggtcagctcacaaggatgagacagcagatggtcagcaacatggttctttaccagtacgct
cttctcaaaggactccagtcatacatccaagcggatcgtttcgcaccttctaggtggtct
gctcccggcgtgcctcccgtttacgacgaggacacgaaagacggaggaggaggatcttcc
ttcttcgacgaagagcagaaacaagcctcctccgaggacgtgtttgaagacggggagatg
gaggacggtgagctagagggtgacttgagctcttaccgagtcctatctagcaagaccttg
gctgatgtcgtcgaagctttgatcggtgtttactacgtggaaggaggtaaagctgcggcg
aaccatttgatgaaatggattgggatccacgtggaggatgatccggaagagaccgaaggg
gcggttaaaccggttagcgttccggagagcgtgctcaagagcatagactttgttggttta
gagagagctttaaagtacgagttcgcggagaaaggtcttcttgtggaagcgataacacat
gcttcgagaccgtcttcgggtgtttcgtgttaccagaggttagagtttgttggtgacgcg
gtgttggatcatcttattacaagacacttgtttttcacgtacacgagccttcctcctgga
aggttaactgatcttcgagctgctgcggttaacaacgagaactttgctcgtgttgcggtt
aaacataagctccacttgtaccttcgtcacggctctagcgccctagagaaacagattcga
gagtttgtgaaggaagttctaaccgagtcttctaaaccggggtttaactcgtttggttta
ggagactgtaaagctccaaaggttcttggagatatagttgaatccattgcaggtgctatt
tttcttgatagtggaagagacacaagtgctgcttggaaggtttttcaacctttgctacaa
ccaatggtgacgccagagacacttccgatgcatccggtacgagagctgcaagagcgttgc
cagcagcaggcagaagggttagagtacaaagcgagccggagtggtaacacggcgactgtg
gaagttttcatcgacggtgttcaagtgggagtggcgcagaatcctcagaagaaaatggct
cagaagctagcggcgaggaacgcactggcagctttgaaagagaaagagatagctgagtca
aaagagaaggcggcaaacgggaatgcaggagatgagagtgagaatgggaacaagaagaat
gggaatcagacgtttacgagacagacgttgaatgatatttgcttgaggaagaattggcca
atgccgtcttacagatgtgtgaaggaaggaggaccggcgcatgcaaagaggtttacattt
ggggtaagagtgaatacaagcgatagaggatggactgatgaatgtattggagagcccatg
cctagtgttaagaaggctaaagattctgctgcttctcttcttcttgagcttctcaataaa
acttattcttga
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