Brassica napus (rape): 106400726
Help
Entry
106400726 CDS
T04128
Name
(RefSeq) uncharacterized protein At3g06530 isoform X1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
bna
Brassica napus (rape)
Pathway
bna03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106400726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106400726
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106400726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_At3g06530
HEAT_HEATR1
BP28CT
U3snoRNP10
Sgf11_N
Meis_PKNOX_N
Motif
Other DBs
NCBI-GeneID:
106400726
NCBI-ProteinID:
XP_022559300
LinkDB
All DBs
Position
C5:complement(53844636..53855733)
Genome browser
AA seq
2207 aa
AA seq
DB search
MSSLLASQLQAIKAVVQADTEPSKRPYTRPSILFSPKEAADFDIESIYELGLKGLEVLGN
KDERFKHFVSDLFSHKSREIDRELLGKEENARIDASISSYLRLLSGYLQFRASLETLEYL
IRRYKVHVYNVEDVVLCALPYHDTHAFVRIVQLITTGNTKWKFLDGVKNSGAPPPRSVIV
QQCIRDTQVLEALCDYGSRTKKYQPSKPVVSFTTAVVVEVLGSVAKVDGDIVKLILPFVD
SGLQSAVKGCLDQQAGALMVVGMLANRASLNDNLIKRFMRSIIDVAREHAKESSDPHWIR
LSFMALINLVQLQSVDLIPKKALDLLKEIRDISGVLRGLSKEFNIKKFLTVLLDSLLLYC
SSDDQCLETLISIIDSVPVEKLVDHLISKVFSMCMTQYQKNKSDFTSSTSGSWAKKILAV
VSKKYSAELRAAVQKFMEDTKGLSKKEDLKLEMLSRMLDGNSDMSLPFVDSKLWFRLHHP
KAAVRCAALSSLNGDLKRDISKAENLVTIQDAIVRQLWDDDLAVVQAALSLDQLPNIVTS
SSLLDALLHVVKRCVGILQSGLSQNVQLAEDVVALSLKIAVSSFCSQAETTEKVASAMFP
FLLVLPKTLNLNLNVLTLGKDVNWPLFRNLGADDGMQKKLPIMSGNISSISMDIINSLGE
ALSLEPDERRIELIESSCNFKLSEVLESCSNMKLTEQERNKLQEGLLIRESVSALNMDVV
NKLVEAFMVQPSDVIQWLTVTCQEAPLAKTLFFVVLMQSLHKMSSSSDPSQFLDLFDICF
SVLKTEWEELEVAVDLSLKELSKSNCQELLYLLSDTSDFTALNSKILICLFWKLVESFIK
LEHTHVSSVFSERLCSGLEDLFFFFATTRSKHVFTEHLHYRVREAKVCPVLFLTRLISRE
DVPPMVRIESLKCFSYLCSNGNSEWSIQIFSSFPVLLVAISIDNQDVKVAAMNCFEALFN
LRCRVDSSKKNGSAAIYSSSCDELLGMIVQQRRLILSDNKFLPSYLTSLFSSTPNDLLAP
VDLQKRFDQPTKESILSFILLCAQELPAYGKLRVISLLKGLGISLMRDENVKLLSHLLDK
RSQYFIKLDKTSPSMSDTEVALLCLLLECSMMRSALFKEQSLDDDILNALKMDCVASEHP
AVISPCLTILEKLSNQYYTELKTDVQIRFFHKLVSMFRGTSGRIQDAAKEAFLRLKISCS
TVIHTLDHITQQDNLVIDSLSKKKKQKKSEEDVNGGELLRGEKALCFIASLLDMLLLKKD
QAHREFLVGPLFKLLGRSMSDEWVKIASSAEETSVEPLQDVREITHASISSIQQTVLLLL
KDIFDSPNMNPLKQADITNEINVKMLVEFAHSSNDGVIRNYIFSLFTSVVKIVPDRVLDH
IISILTLVGESTVTQIDSHSKSIFEEFISSVIPFWLSKTKSEEQLLEIFVKVLPDIVEHR
RRSIVAYLLGVIGEQNGLPSLLVLLFKSLLSRKDSAWLGNVQNSDSFISDVKREWEYAFA
VEICQQYTSSTWVSSLVMLLQTISKDSSSKECLFQMRLVLEFIFEKLQDPEFAFAVSLEP
RNNISVGIQQELQELMKGCILLPQAVDSTKEKDVTSAVRKEIKMRIHDVLMTVTGVMDLS
IYFRVVTSLLKQQSDRNGTKKVLGLISARAKDSTTSKPKHKKRLPNQKRGNPWLNLDEAA
VEAFGKMCEEIVNVIVETDEDSDVPAKRAAISTLEVLASRLPSGHPIFSKCLASVAEGIS
SKNLGVSSSCLRTTGALINVLGPKSLVELPRIMKNLVQQSREVSSASTGDATAEEQLLMM
SVLVTLEAVIEKLGGFLNPHLGDIIRLMVLHREYVSDFDKNLKSKANAIRRLLTEKIPVR
LTLQPLLRIYDEAVSSGDASLVIAFDMLENLVAKMDRASVVCNHAKIFDQCLAALDIRRQ
NPATIQNVDDAEKSVINATVTLTKKLTESEFKPLFIRSIDWAESEIVDGSGNESKSVDRS
ISFYGLVNRLCKAHTSIFVPYFKFMLDGIVSHLTSAGGASVSTTRKKKKAKIQETDDTLP
PKRWHLRALVLSSLNNCFLHDTGSLKFLDANNFQVLLKPIVSQLLVEPPSDLKELPNVPS
VEEVDELLVTCIGQMAVASGSDLLWKPLNHEVLMQTRSEKLRARLLSLRSVKQMMDNLKE
EYLVLLAETIPFLGELLEDVDLSVKSLSQDIITQLEVMSGEDLAQHL
NT seq
6624 nt
NT seq
+upstream
nt +downstream
nt
atgagctctttgttagcgtcccagctacaagccatcaaggcggttgttcaagccgataca
gagccgtcgaagagaccttacacacgcccgtcgatcctcttcagtcccaaagaagcagcc
gatttcgatatcgaatcaatctacgagctagggctcaaaggtctcgaagtgcttggaaac
aaggatgagcggtttaagcacttcgtaagcgatttgtttagtcataagagtagagaaatc
gatagggagttgcttggtaaggaagagaatgctcggattgatgcgtcaatcagctcgtat
ctacggctactctctggttatcttcagtttcgtgcttcattggagacacttgagtatctc
ataagaagatacaaggttcatgtatacaatgtggaagatgtagtgctatgtgctttgccg
tatcacgacactcatgcctttgttcgtattgttcagctgattaccactggtaacaccaag
tggaagtttctggatggggtgaaaaattcaggtgctccacctcctagatcggttatcgtt
cagcagtgtatacgtgatacgcaggtcttggaggccttgtgtgactatggatctcggact
aagaagtaccagccttcaaaacccgtggtcagcttcaccacagctgttgtcgtcgaggtt
cttggttctgttgcaaaggttgatggagatatcgtgaagctgattttgccgtttgtcgac
tctggtcttcaatctgctgtgaaaggatgtttagatcagcaggctggtgcgttaatggtt
gttggtatgctggccaacagagcctcgctaaatgataatcttatcaagcgttttatgaga
tcaatcatcgatgttgctcgtgaacatgccaaagaatcctctgatcctcattggattcgg
ttgtcgtttatggcattgattaatttggttcagttgcagtctgtggacttgattccaaag
aaagctttggaccttttaaaggaaataagggatatttctggtgttcttcgaggcctgtcc
aaagagttcaacatcaagaagttcctgacagtgttactagattctcttctcctttactgt
tcctcagatgatcagtgcctagaaactttaatttcgataattgatagtgttccagtagaa
aaattggttgatcatttgatctccaaggttttctctatgtgtatgacacaatatcagaag
aacaaaagtgattttacatcttctacatctgggagctgggctaagaaaattctagctgtt
gttagtaagaagtattccgctgaactacgtgcagcagtacaaaaatttatggaggatact
aaaggtctgtcgaagaaagaagatttgaagctggagatgttgtctcgtatgctggatggg
aattcagacatgtccctgccgttcgtggattcaaaattgtggttccgtctccaccatccc
aaggctgctgtacgttgtgctgcgctttctagtctaaacggtgatctcaagcgtgatata
tctaaagcagagaaccttgtcacaattcaagatgctattgtgcgccagctttgggatgat
gatctggctgttgttcaggccgccctgtcccttgatcagttgccgaatatagtaacctct
tctagtcttctggatgctttgcttcatgtggtgaaacgttgtgttgggattctccaatca
ggtttatcacaaaatgttcaactggcagaagatgtcgttgctttatcccttaaaattgct
gtctcaagtttctgtagtcaagcagagactactgagaaagtcgcctctgcaatgttccca
tttcttttagttctgccgaagactttgaatttaaacctaaatgtgctgacattggggaag
gatgttaactggccacttttcaggaatcttggtgctgatgacggaatgcagaagaagctc
ccaatcatgtcaggaaacatatcctcgataagcatggatattattaatagtttgggggag
gcactttccttggaacctgatgagcgtaggattgagctaattgagagttcttgcaatttt
aagctctctgaagttttggaatcatgcagcaatatgaaattgacagaacaggaacgcaat
aagttgcaggagggactgttgatccgcgaaagtgtgtctgcattgaacatggatgtcgtt
aacaagctggtggaagcatttatggtgcaacctagtgacgttattcaatggcttactgtc
acttgccaagaggcaccgttggcaaagacgctgttctttgtggtgttgatgcagtcattg
cacaagatgagttcttcttctgatcctagtcaatttttggatcttttcgacatttgcttt
tctgttttaaagaccgagtgggaagaacttgaggttgcagttgatctctctttgaaagag
ctgtcgaaaagcaactgccaagaactcttatatctactttctgacacctctgattttact
gcactgaattcaaagattcttatctgcttgttttggaagctggttgagtccttcataaaa
cttgaacacactcatgtctcttcggtttttagcgaaaggttgtgtagcggacttgaagac
ttgtttttcttttttgcaacaacccgatcaaagcatgttttcacggaacatctccactac
cgtgtgagagaagccaaagtctgtcccgttttgtttctcactcggctcatatcacgagaa
gatgttcctcccatggtcagaattgaaagtctcaaatgcttctcgtatctttgctctaat
ggaaatagtgaatggtcgattcagatattctctagttttccagtacttctggttgccata
tcgattgataatcaggacgttaaagtagctgctatgaattgctttgaggcgctcttcaac
ctacggtgtcgtgttgactctagcaagaaaaatgggagtgctgcaatctatagtagttct
tgtgatgaactgttgggaatgattgttcaacaaaggaggcttatattgtcggacaataag
tttcttccatcctacttgacatcgttgttcagttcaacccctaatgacttactagcgcct
gtggacctgcaaaaaaggtttgatcaacccacaaaagaaagcattctttcgttcatctta
ttgtgtgcgcaagaacttcctgcttatgggaagctaagagttatatcactgctaaagggt
ctgggcatctcacttatgcgtgatgaaaatgttaagttattgtctcaccttctagacaaa
cgtagtcaatacttcattaaactggataaaacttccccttcaatgtcagacactgaggtc
gctttgttgtgccttcttctggagtgctccatgatgcgttcagcgttgttcaaagagcag
tctcttgatgatgatatactgaacgcattgaaaatggattgtgtggcatcagagcatcct
gctgttatctccccttgtcttactattttggagaagttaagcaatcaatattatacagaa
ctgaagaccgacgttcagattcgtttcttccacaagctcgtgtcaatgtttcgaggtaca
agtggcagaatacaagatgctgctaaagaagctttcttacgcctgaagatttcttgttca
acggttatccataccctcgatcatatcactcagcaggataatcttgttattgattctttg
agcaagaagaagaaacagaagaaatcagaagaagacgtaaatggtggggaacttctaaga
ggagaaaaggctctctgtttcattgcctcgttacttgacatgctgcttctaaagaaagat
caagctcacagggagttccttgtagggcctttgtttaagctcctaggaagatctatgtct
gatgaatgggtgaagattgcttcgtcggctgaggaaacctcagttgaacctcttcaggat
gttcgtgaaataactcatgcatctatttcttccatccaacagacagtgctcttactcctg
aaagatatatttgattctccgaatatgaatcctttgaagcaggctgacataacaaatgaa
atcaatgtcaaaatgctggttgagtttgctcattcctcaaatgatggagtcatacggaac
tatatcttctccctcttcacttcagtagttaaaattgtcccagatagagttttggaccat
atcatcagcatacttacactggttggcgaatcaacagtgacacagattgatagccactcg
aagtcgatctttgaggagtttatatcatcggttattccattttggctgtctaagactaaa
agtgaggagcagttgctggagatttttgttaaagtgttgcctgatattgttgagcataga
aggcgttctattgtagcttacctgctgggagttattggtgaacaaaatggcctgccttct
ttacttgtcctcttgttcaagtccctactttcaaggaaagactcagcttggcttggtaat
gtccagaattcggatagttttatatccgatgttaagagggagtgggagtatgcctttgcc
gtggaaatatgccaacagtatacttcttcaacatgggtctcatccctggtcatgcttctt
caaactatcagcaaagacagttctagtaaagagtgcttatttcagatgcggcttgtctta
gaatttatattcgagaaattgcaagacccagaatttgcatttgcagtgtcacttgaacca
agaaataatatttcagttggcattcagcaagaactacaggagcttatgaagggttgtata
cttctcccgcaagctgttgattccacaaaggagaaagatgtgacttctgctgttagaaag
gaaatcaaaatgcgtatacatgatgtcctgatgactgttacaggagttatggatctgtct
atatatttcagagttgttactagcttacttaagcagcagtcagatcgtaatgggacgaaa
aaggtacttgggcttataagtgcgagagctaaggactccactacttctaaaccgaaacac
aagaagaggctccccaatcagaaaagaggaaatccttggttgaacctggatgaggcggct
gttgaagctttcgggaagatgtgcgaggaaatcgtcaatgtaattgttgagacagatgaa
gattcagatgttccagctaaacgagctgccatttctacactggaagttttggctagcagg
cttccctctggtcacccgatcttcagcaagtgtcttgcatctgtcgcagaaggcatcagc
tcaaagaatctgggagtttcttcaagctgtcttcgtacaaccggtgcgttgatcaatgtt
cttggcccaaagtcactcgttgaacttccacgcataatgaagaatctggtacaacaatcg
cgcgaagtatcatctgcatcaactggagacgcaacagccgaggaacagttgcttatgatg
tctgttctcgtcactttggaagcagtgattgaaaaactcggaggtttcctaaatccccac
cttggggatatcattagactcatggtgctgcatcgtgaatatgtttctgacttcgacaag
aaccttaaatccaaagccaacgccatcaggcgactccttactgaaaaaataccagtccgc
ctcactctgcaacctcttctacgaatatacgatgaggctgttagttctggcgatgcaagt
ttggtgattgctttcgatatgctagagaatctagtcgcaaaaatggatagagcatctgtt
gtttgcaaccatgcaaagattttcgaccaatgcttagctgccttagatatccgacgccaa
aatccagcaacaattcagaacgttgatgatgcggagaaaagtgtaatcaatgcgacggtt
acactcacaaagaagctaaccgagtctgagttcaaacccctctttatcaggagtatcgat
tgggcagagtcagagattgtagatggatctgggaatgaaagcaagagcgtcgacagatct
atctctttctatggtctggtgaatagactctgcaaggctcacacgtcgatctttgtaccg
tatttcaaattcatgcttgacggtattgtatcgcatctcaccagtgcgggaggagcatca
gtttcaacaacgaggaagaaaaagaaagccaaaattcaggaaacggatgatactctacca
ccaaaacgctggcatcttagggcgttggtgctttcttctttgaataactgctttttgcat
gatactggaagcttgaagtttctcgacgcaaataacttccaggtgctattgaagcctata
gtatcacagcttcttgttgaaccgccatctgatttgaaggagcttccaaatgtaccatct
gtagaagaggttgatgagttgctggtcacatgcatcggtcaaatggctgtagcctcgggc
tctgatctcctctggaaaccactcaaccacgaggtgctaatgcaaacaaggagtgagaag
ttgcgtgcgaggttgttgagtttgaggagcgtgaaacagatgatggataatctgaaagaa
gagtaccttgtgttgctcgctgaaaccattccgttcttgggtgaactactggaagacgtt
gatctgtctgtcaaatctttgtctcaagatatcatcactcagttggaagtgatgagcggt
gaagatctggcacaacacctctga
DBGET
integrated database retrieval system
