Brassica napus (rape): 106400775
Help
Entry
106400775 CDS
T04128
Name
(RefSeq) phytochrome B-like
KO
K12121
phytochrome B
Organism
bna
Brassica napus (rape)
Pathway
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106400775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_4
PAS_9
PAS_8
PAS_3
sCache_3_2
Motif
Other DBs
NCBI-GeneID:
106400775
NCBI-ProteinID:
XP_022559055
LinkDB
All DBs
Position
C5:complement(47025158..47029624)
Genome browser
AA seq
1168 aa
AA seq
DB search
MVSGVGGGGGSGGSGRGGGGEESSSTHRREQAQSSGTKSLRPQNQPPQTESMSKAIQQYT
VDARLHAVFEQSGESGRSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIA
VDESTFTIIGFSENAREMLGLTPQSVPSLERPEILAMGTDVRSLFTSSSSILLERAFAAR
EITLLNPVWIHSKYTGKPFYAILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAI
SQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESRREDLEPYIGLH
YPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYM
ANMGSIASLAMAVIINGSEEDGSSVAGGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLM
QAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFL
YHGNYYPLGVAPTEAQIKDVVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVA
YITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETA
EMDAIHSLQLILRDSFKESEAAMNSKTADGAVQPYSMAGEQGIDELGAVAREMVRLIETA
TVPIFAVDAGGCINGWNAKIAELSGLSVEEAMGKSLVSDLIYKENEETVDKLISRALRGD
EDRNVEIKLKTFSPELQGKAVFVVVNACSSKDYSNNIVGVCFVGQDVTGQKIVMDKFINI
QGDYKAIVHSPNPLIPPIFAADENTCCLEWNTALEKLTGWSRSEVIGKMLVGEVFGSYCR
LKGPDALTKFMIVLHNAIGGQETDKFPFPFFDRNGKFVQALLTANKRVSFDGKVIGAFCF
LQIPSPELQQALTVQRRQDTECFTKAKELAYICQVVKNPLSGLRFTNSLLEATDLNENQK
QLLETSVSCEKQISRIVSDMDLERIEDGSFELVRTEFLLGSVINAIVSQAMFLLKERGVQ
LIRDIPEEIKSIQVYGDQTRIQQLLAEFLLSIIRYAPSHEWVEIHISHVPKQMADGFYAI
RTEFRMVCPGEGLPPELVRDMFHSSRWTIPEGLGLSVCRRILKLMNGEVQYIRESERSYF
LIILGLPVPMKRPLSTASGSGDMMLMMP
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggtttccggagtcggcggcggcgggggaagcggtgggagtggccgcggcggaggcgga
gaagaatcctcgtcaactcaccggagagaacaagctcaatcctcagggacgaagtctctc
aggccgcagaaccaaccgccacaaacggaatcaatgagcaaagctattcagcagtacaca
gtcgacgccagactccacgccgtcttcgaacaatccggcgagtccggaagatccttcgac
tactcacaatccctcaaaacgacgacgtacggatcctcggtccccgagcagcagatcacg
gcctacctctccaggatccagcgcggcggctacatccagccgttcggatgcatgatcgcc
gtcgacgagtccaccttcaccatcatcggcttcagcgagaacgcgcgggaaatgctcggc
ctcacgcctcagtccgtccccagcctcgagaggcccgagattctcgccatgggaaccgac
gtccgctccctcttcacctcctccagctcgatcctcctcgaacgcgccttcgcggcgcgt
gagatcacgcttctgaatcccgtttggatccactccaagtacactggcaagccgttttac
gctattctgcacaggatcgacgttggtgttgtgatcgatttggagccggctaggagtgaa
gatccagcgctttcgatcgccggagcggttcagtctcagaagcttgccgttcgcgctatc
tcgcagttacagtctctccccggtggagatattaagctactttgtgacactgttgtggag
agtgtgagggacttaactggatacgaccgtgtgatggtgtacaagtttcacgaagacgag
catggagaagttgttgcggagagtaggagagaggatttagagccttacattggtttgcat
tatccagctactgatattcctcaagcgtcacggttcttgtttaagcagaatcgtgtgcgt
atgatcgttgattgccacgcgaccccggttctcgtggtgcaagacgataggctgactcag
tctatgtgcttggttggctctactttgagagctcctcacggttgtcactctcagtatatg
gctaacatggggtctatcgcgtcgttagcgatggcggttataataaacgggagtgaagaa
gatgggagtagtgtcgctggtgggagaagctcgatgaggctttggggtttagtcgtttgc
catcatacatcttctcgatgcataccgtttcctttgaggtatgcttgcgagtttttgatg
caggcgtttggtttacagttgaacatggagttgcagttagctttgcagatgtcggagaaa
cgcgttttgaggacgcagacgctgttgtgcgatatgcttctgcgtgactcgcctgctggg
attgttacgcagagtcctagtatcatggacttggtgaaatgtgacggtgcagcgtttctt
taccacgggaattattacccgttgggtgttgctccgacggaagctcagattaaagacgtt
gtggagtggttgcttgcgaatcacgctgattcaactggtttaagcactgatagtttaggg
gacgcaggttatcccggagcagctgcgttaggggatgctgtctgcggtatggcggttgcg
tacatcacaaaaagagatttccttttctggtttcgttctcacaccgctaaagaaatcaaa
tggggaggcgctaagcatcatccagaggacaaagatgatgggcaacggatgcatcctcgt
tcgtctttcaaggcttttcttgaagttgttaagagtcggagtcagccatgggaaactgcg
gaaatggatgcgattcattcgctccagctgattctaagggactcttttaaagaatccgag
gcagctatgaactctaaaactgcagatggtgcggttcagccttacagtatggcaggagag
cagggaattgatgagttaggtgctgttgcaagagagatggttagactcatcgagacagca
actgtgcctatattcgctgtggatgctggaggatgtatcaatggatggaacgctaagatt
gcagagttgtccggtctctcggttgaagaagctatggggaagtctctggtttctgatcta
atatacaaagagaatgaagaaactgttgataagctcatttctcgtgcgctcagaggggac
gaggacaggaatgtggagataaagctgaaaactttcagccctgaactacaagggaaagcg
gtttttgtggttgtgaatgcatgttcgagcaaggactactcaaacaacattgttggcgtc
tgttttgtgggacaggatgttactggtcagaaaatcgtaatggacaagttcatcaacata
caaggagactacaaagccatcgtccatagcccaaacccactgattccaccaatctttgcg
gcggacgagaacacgtgctgcctggagtggaacaccgcgttggaaaagctcactggttgg
tctcgcagtgaagtgattgggaaaatgcttgttggggaagtgtttgggagctattgcagg
ctaaagggtcctgatgcattaaccaagttcatgattgtattgcataatgcaatcggtggc
caagagacggacaagttccctttcccgttctttgaccgcaacgggaagtttgttcaggca
ctattgactgcaaacaagcgtgtaagcttcgacgggaaagttattggggctttctgtttc
ttgcagatcccgagtcctgagctgcagcaagctttaacagttcaacgaaggcaggacaca
gagtgtttcacgaaggcgaaagagctagcttacatttgtcaggtggtaaagaatcctttg
agcggtttgcgtttcacaaactcgttgttggaagctacagacttgaacgaaaatcagaaa
cagcttcttgaaacaagtgtttcttgcgagaaacagatctcgaggattgtcagtgacatg
gatcttgaaagaattgaagacggttcgtttgagctagttagaacggagtttttactcgga
agtgtcatcaacgcgattgtaagccaggcgatgttcttattaaaggagagaggcgttcag
ctgatccgtgacattcctgaagagatcaaatcaatacaagtttatggagaccagacaagg
attcaacagctcctagctgagtttctgctgagtataatccggtatgcaccgtcccatgag
tgggtggagatccatataagccatgttccgaagcaaatggctgatggattctacgctatc
cgcacagaatttagaatggtgtgcccaggtgaaggtctgcctccagagctggtccgagac
atgtttcatagcagcaggtggacgatccctgaagggttaggtctaagcgtatgtagaagg
attctaaagctcatgaacggcgaggttcagtacatcagagagtcagaacgctcctatttc
ctcatcatactcgggctccccgttcctatgaaacgccctttgtcaaccgctagcggcagc
ggcgacatgatgttgatgatgccataa
DBGET
integrated database retrieval system
