Brassica napus (rape): 106401054
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Entry
106401054 CDS
T04128
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106401054
Membrane trafficking [BR:
bna04131
]
Protein recycling
Others
EARP complex
106401054
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Xre_MbcA_ParS-like_N
Motif
Other DBs
NCBI-GeneID:
106401054
NCBI-ProteinID:
XP_048608721
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Position
C3:complement(16954672..16962440)
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AA seq
1117 aa
AA seq
DB search
MQPNLFPFGSVLGNPFLFNGGDLSEGGGGFESSRLFFLLPLLLSQGQGMDLSKVGEKFLS
SVKSATSLGLLPSPSSSSDRPEIPARAAAAAAVARALAALPPDQRLSISSTATELSSIYG
NRPPPQDVQELEEGFYEEDFDPVRHILENVPDDQSDLAYFEMQATLRLVQLDRVAESLSH
HVMEHHEVMVKGMNLVRELEKDLKIANVICKNGRRNLTSSMNEASRDLIVHTHSKKKQAL
LDMLPILTDLRHARVMQSSLEDLVEEGNYCKAFQVLSEYLQLLDSLSEFSAIQEMTRGVE
VWLGRTLHKLDSLLMGVCQEFKEDSYIMVLDAYALIGDVSGLAEKIQSFFMQEVISETHS
VLKTVVGEDNSAATQFSRLTYSDLCIQTPESKFRQCLLRTLAVLFQLIYSYHQIMSFTPE
KKVEDLISTSSATTQKIDSVTDTSCDPQGGGLSSTISSASIPSSTISAEVSVGSETSSPV
QHASNSAIDESRDSGDTVSNGESPWYYLRKESAGFVSGTLQRGRRNLWQLTTSRVSVLLS
SPAASSTSIHQFLKNYEDLSVFILAGEAFCGFEVVDFREKLKAVCENYFTAFHRQSMHAL
KMVLEKETWTRLPPDTVQAINFAGLVGDGAPLIISSRSASGSSRFPLSTDPSGNRSGGFS
YWLKSGNPFSAKLTYYREDQDYSSDSGAASEDQDYSSDVVNSKVRDRKGINGGSPVSGDE
NEDLHADYIDEDSQLPRRSFTRSISRSSSSHLSINDDLKAQTGSSLCLLRSMDKYARLMQ
KLELVNVEFFKGICQLFGVFFYFVYHVFGQENTNSGGKGVSSHRLKSCLSRISQECEQWI
KPQFSSSSPSSSLAFPNTVHSLADVTPSSPLNTTSGHVSGISFSLKERCAAVDTVSLVAR
ILHKSKAHLQSMLMSRNGSLVEDFFGQLVGSVPDLTEHLHRTTARILLHVNGYVDRIANS
KWEVKELGVEHNGYVDLMLGEFKHYKTRLAHGGIPQEVQNLLLEYGVEIFAETLVEGLSR
IKRCTDEGRALMSLDIQVLINGLQHFVPTNVKPKLQIVDTFIKAYYLPETEYVHWARAHP
EYTKGQVVGLVTLVATMKGWKRKTRLEVVEKIESAAA
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctaatctgttcccattcggctctgttttgggtaatccgttcctattcaatggc
ggagatctaagcgagggtggtggtgggttcgagagctctaggcttttcttcttacttcct
ctcttgttgtcccaaggccaaggcatggatttatccaaggttggcgaaaagttcctcagc
tctgttaagtccgctacatcccttggactcttaccctctccttcttcttcctctgatcgc
cctgagattccggcacgtgctgctgctgcagctgctgttgctcgtgctttggctgccctt
cctcctgatcagaggttaagtatctcttccaccgctacagagcttagctccatatacggt
aacaggcctcctcctcaagacgttcaagagcttgaagaaggcttctatgaagaggatttt
gatccggtgagacatattttggagaatgtgccagatgatcaaagtgatctagcttatttt
gagatgcaggccaccctgaggttagtacagctggatagagtggcagaaagtctgtctcac
catgttatggagcatcatgaagtaatggtgaaggggatgaatttggttagagaactggaa
aaagatttgaagattgcaaacgtcatctgcaagaatggaagaaggaatttgacttcctct
atgaatgaggcttcaagagatcttattgtacacacccattccaaaaagaagcaagctctt
ctggacatgcttcctatactaactgatcttcgccatgcaagagtaatgcagtcaagtctt
gaagaccttgttgaagaaggaaactattgcaaggcatttcaagttctgtctgagtatttg
cagcttcttgacagtctctctgagttttcagctatccaagagatgacccgtggtgttgag
gtttggttaggaagaactcttcataagctggattcacttttgatgggcgtttgccaggag
ttcaaagaagatagttatataatggtcctcgacgcttatgcactgattggtgatgtctct
ggtctcgcggagaagatacaaagcttctttatgcaagaagttatctcagaaacccactca
gtgctaaagactgttgttggggaggataacagtgcagccacacaatttagtagacttaca
tacagcgatctatgtattcagacaccagaatccaagtttaggcaatgtctgttgagaaca
ctagctgtgctatttcagttaatatattcgtaccatcagataatgagtttcactccagaa
aagaaggtagaagatttgatctcaactagttctgcaacaactcaaaagattgattcagtg
acagacacttcatgcgacccacagggtggtggtctctcttcaaccataagttcagcaagc
ataccttcttccaccatttctgctgaagtgtctgttggaagtgaaacctccagtcccgtg
cagcacgcgtctaatagtgcaatagacgagtctagggattctggagatacagtatctaat
ggcgagtcaccatggtactatctacgaaaagagagtgctggttttgtttcaggaactctg
cagagaggacgaagaaatctatggcaactcacaacaagccgtgtgtcagttttgctctca
tccccagctgcttcttcaacaagtatacatcagttccttaaaaactatgaagacctgagc
gtctttatccttgctggggaagccttctgtggatttgaagttgttgactttagggagaag
ctaaaggctgtatgcgaaaattatttcactgcgtttcataggcaaagcatgcatgcgctt
aaaatggtcctcgagaaggagacatggacgagattgccacctgatacagtgcaagctata
aattttgctggtcttgtgggggatggggctccccttattatttcttcccgaagtgcctct
ggttcttccagattccctctctcaactgatccgagtgggaacaggagtggtggattctca
tattggctgaaaagtggaaaccctttctcagcaaagttaacttactatagagaagatcaa
gactactcctcagacagtggagctgcctctgaagatcaagattactcctcagacgttgtg
aattccaaggtaagagatagaaaaggcattaacggaggtagtcctgtttcaggggatgaa
aatgaagaccttcatgctgactatattgatgaagatagtcagcttccaagacgaagtttt
acacgtagtatatcaaggagttcttcttcacatttgagtattaatgatgatttgaaagct
caaacaggatcgtcgctgtgccttctaagatcaatggataagtacgcgaggcttatgcag
aaacttgaactcgttaatgtcgaattctttaagggaatatgccaattgtttggggtcttt
ttctatttcgtgtatcacgtatttggtcaagagaatacaaattcaggtggaaaaggagtg
tccagccatcgtttgaaaagctgcttatcccggatatcacaagagtgtgagcaatggata
aaacctcagttttcatcatcatctccatcttcttcacttgcctttcccaacacagttcat
agtcttgcggacgtgactccatcaagtcccttaaatacaacatctggtcacgtatcaggc
atatcttttagtctcaaggaaagatgtgctgcagtggacactgtttctcttgtggctcga
atattgcataaatcaaaggctcatcttcaatcgatgcttatgtcaagaaatggctctttg
gttgaagacttctttggtcaactggttggttccgtacctgatctgacagagcacttacac
aggacaactgcgaggatcctgctgcatgttaatggatatgttgaccggattgctaattct
aaatgggaagtcaaggagcttggagtggagcataatgggtatgttgatttgatgcttggg
gaattcaaacactacaaaacaaggcttgctcacggaggcattccacaggaagtccaaaac
ctcctactggaatatggcgttgaaatatttgcggagacgctggtggaaggtctatctcga
ataaaaagatgcaccgatgaaggacgtgctctcatgtcattagatattcaggttctaata
aacgggctacaacactttgtgccaacaaatgtgaaacccaagttgcagatagtggacaca
tttatcaaggcatactatctaccagagacggagtatgtccactgggcaagggctcatccg
gaatatacaaaaggacaggtcgtaggacttgtaactttagtagccaccatgaaaggctgg
aagaggaaaacgcggctagaagtagtggagaagattgaatcagctgctgcgtag
DBGET
integrated database retrieval system
