Brassica napus (rape): 106401092
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Entry
106401092 CDS
T04128
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
bna
Brassica napus (rape)
Pathway
bna04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106401092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106401092
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
106401092
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
HECT type E3
106401092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
DUF4865
Motif
Other DBs
NCBI-GeneID:
106401092
NCBI-ProteinID:
XP_048602623
LinkDB
All DBs
Position
C2:complement(507457..514252)
Genome browser
AA seq
1480 aa
AA seq
DB search
MENRGQKRMEVVGEPPADKRACNSQDFTSGGSSAQAQQANGNTDADMDTSSSASPSSRSD
GEQDREEEEEESDYGSCDSDDADPRRRVLQRFQRGRSTGDQLKLKSLASRLSEENDPSLQ
LTGLTELCEVLSFCTEDSLSIVMADLLSRVLVKLAKHESNADIMLLAIRAITYLCDVYPR
SVAFLVKHETIPALCQRLLTIEYLDVAEQCLQALEKISRDQPVACLNAGAIMAVLSYIDF
FSTSIQRVAVSTVVNICRKLPPEPPSPVMDAVPVLCNLLQYEDRQLVESVAICLTKIADQ
VSQSPAMLDQLCSHGLIHQSTHLLNLNSRTTLSQPVYNGVIGLLRKLSSGSTLAFRTLYE
LNIGYRLKEIISTYDISHSVSSTQPIHPCSNQVHEVLKLVIELLPASPVGDNQLALEKES
FLVDQPNLLQQFGAEMLPVMTQVLKSGASVYVSYGCLSAIHKLTCLSKSDDLVELLNNAN
ISSVLAGIFSRKDHHVVVVALQIAEVLLEKYRDAFLNSFIKEGVFFAIAALLTSDRGQQI
NPVSGFIQGSVPKEIVKCLCQSFEGSVSSSSQTCKVGNDSVYILATRIKESFFGPEVFDS
QKGLTDVLQNLKNLSAELNDLVTVPVDAHVLHGERFFSIWNQIMARLKERESVSTFEFTE
SGVVKALANYLSNGLYERKLNKGDPECDSLPLVGNRFEVFTRLLWSDGEATLSALIQKLQ
NSLSSLENYPIVLSQFLKQRNCFAAIPNGRCISYPVLRVRFAKAEGETCLRDYSPNFVTV
DPLCYLDAVSQCLWPQVNLEPLNSVEAKDQAIECQSSQLQSTSISCQGESSTHMEIDCPN
ASQLQGSQEEEDQDHLIDSGEENSSSSKEEDVRPRLLFRLEGLELDPSLTVYQAILSHKL
KSENETTNDSKLSGHHTITYERAPQLAVFHENLFPLRSMDNDEHHPFLSYLFAHRLGLRH
KGTSPPEYAILFLLKSLEGMNRFLFQLICHERINAFGEGRLESLDDLTVQVRPVPYAEFV
SSKLTEKLEQQLRDSFAVSPCGLPPWFNDLMASCPFLFSFEVKSKYFRLAAFGPQQVHNQ
PQHLGSSNVHGSLPRKKFLACREKILESAAKMMELHGTQKVAVEVAYSEEVGTGLGPTLE
FYTLVSRAFQNPDLGMWRSDPSSLAGKPMVPPSGLFPRPWSATSAAFPGVLQKFVLLGTV
VAKALQDGRVLDIPFSKTFYKLILGQELSSFDIHFVDPELCKTLVELQALARRRKVISES
QSDVRAAKCDLSFRGTKIEDLCLDFSLPGYTDYVLSPRFANDMVNLGNLEEYVKAIVNAT
VCNGIKKQVEAFRSGFNKVFPIEHLKIFNEEELETLLCGERDLFNMNEVLDHIKFDHGYT
SSSPPVQNLLEILHEFDKEQQRAFLQFVTGCPRLPPGGLASLSPKLTIVRKHGSDSSETD
LPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaggacagaaacgaatggaggttgtgggggagccacctgctgataagaga
gcttgcaactcacaggacttcacatctggtggctcctctgctcaggctcaacaagccaat
ggtaacactgatgctgacatggacacttcttcctctgcctctccttcgagtcgttcagat
ggagaacaagacagggaggaggaggaggaggaatccgactacggatcctgcgattctgat
gatgcggatccgaggaggagggtgcttcagcggtttcagagggggaggtcaacaggagat
cagctgaaactgaagtctctcgcgtcgaggttgagtgaagaaaacgatccttcgctgcag
ttgactggtcttacggagctctgtgaagtgttgtctttctgtactgaggactctctgtcc
attgtgatggctgacttgctctcccgggtgcttgttaagttggctaagcatgagagtaat
gcagatatcatgttgctcgctatcagagcgattacttacttgtgtgatgtttatccgcgg
tcggtagcgttccttgttaaacatgagaccattcctgctctctgccaaaggctactgacg
attgagtacttggatgttgctgagcagtgtctgcaagcacttgagaagatatccagagat
cagccggtagcatgcttgaacgctggagcaattatggcagtgctttcgtatatcgatttc
ttttcaacaagcatacagagagtcgcagtttctactgtggtgaatatatgtaggaagctt
ccacctgagcctccctcgcctgtcatggatgctgttccagtattatgcaatcttcttcaa
tatgaagaccgacagttggtcgagagtgtcgctatttgcttaacaaaaatagcagatcaa
gttagccagtcgcctgcaatgttggatcagctatgtagccatggactaatccatcaatcc
acacatcttttaaacttgaacagccgcacaaccctatctcaacctgtttacaacggcgtg
attggattgctaagaaaactatcttctggttcaactttagctttcagaacattgtatgag
cttaacattggctacagactaaaagaaatcatatccacctatgacatttctcattcagtt
tcttctacacagcccatccatccatgctccaaccaggtgcatgaagtcttgaagttggtg
attgagcttcttccagcttcacctgttggggataatcagctggcattagaaaaggaaagt
tttcttgtcgatcagcctaatctcttgcaacaatttggagcagaaatgcttcctgttatg
actcaggtgctaaagtctggagctagtgtttatgtttcttatggttgcctatcagcaatt
cacaagctgacttgcttaagtaagtcagacgatcttgtcgagttactgaacaatgctaac
atttcaagtgttttggcgggcattttttcaaggaaagatcatcatgtggtcgttgttgca
ctacagattgctgaagtgcttcttgagaaatacagagatgcttttttgaattcctttata
aaagagggtgtttttttcgcaatcgcagcactcctaacttctgataggggacaacagatc
aatccagtatccggtttcattcaaggatctgttccgaaagagattgtgaaatgcttgtgc
cagtcttttgaaggatcagtttcctcttcttcacaaacttgcaaggttggaaatgattct
gtctacatcctcgcaacacgtatcaaggagagtttctttggacctgaggtattcgactct
cagaaaggcttgacggatgtcctccagaacctcaagaatctgtcggcagaactcaacgat
ttggtgactgtacctgtcgatgcgcatgtcctgcatggtgagaggttcttctcaatatgg
aatcaaatcatggcaaggctgaaagagagggaatctgtgtccacttttgaatttactgag
agtggagttgtgaaggctctggcaaattatctgtctaatggactctacgaaaggaaactt
aacaaaggcgatcctgaatgtgacagtttaccacttgttggtaacagatttgaagtgttc
acaagactactttggtctgatggcgaggcaactctgtccgctttaatacagaagctccaa
aattccttatcttctttagaaaactacccaattgtcctgagccagtttttgaagcaaagg
aactgtttcgctgctattccaaatggacgttgcataagttatccagtcctaagagttcgt
tttgctaaagcagagggggagacttgtctgcgtgattactctccaaactttgtcaccgtt
gacccactttgctacttggacgctgtcagtcagtgcctgtggccccaagtgaatttggaa
cctttaaattctgtcgaagcgaaagatcaggctatagaatgtcaatcttcacagctgcag
tcaacttcgatatcttgtcaaggtgaaagctcaacccatatggaaattgactgtcctaat
gcatctcagctgcagggatctcaagaggaggaagaccaagatcaccttatagattcagga
gaagagaattcttcctcatctaaagaagaggatgtgcgacctcgacttttgtttcgtctg
gaagggcttgagctagacccctctttgactgtttaccaggcaattctctcgcacaaacta
aaatcagaaaatgagactaccaacgattcaaagcttagtggacaccacaccatcacttac
gaaagagctccacagcttgcagtgtttcatgaaaatctgtttcccctcagatctatggac
aacgacgagcatcacccgtttttatcctacttgtttgctcatagacttggtttgcgccac
aaagggacaagtcctcctgagtatgccatattgtttctgctcaagagtctggagggcatg
aacagatttctctttcagctgatttgtcatgaaaggattaatgcttttggggaaggtagg
ctggagagtttggatgatctaactgtgcaggtgcgtccggtgccatatgctgaatttgtt
agctctaagcttacagagaagttagagcagcagctgcgtgattcttttgctgtgtcaccg
tgcggtctaccaccgtggtttaatgatctaatggcttcatgcccgtttctgtttagtttt
gaagtcaaatctaaatacttccgacttgcagcgttcggtccacagcaagtccataatcag
ccacagcaccttggcagttcaaatgttcatggtagtttacctcgtaaaaagtttttagct
tgccgtgaaaagattctagagtctgctgcgaaaatgatggagttacacggcacccagaag
gtggccgttgaggttgcgtacagtgaagaagtcggaactggccttgggccaacgctggag
ttctacacacttgtcagtagagcatttcaaaatccggatcttggtatgtggaggagtgat
cctagctccttggctggaaagccaatggtacctccttcaggactctttccacgcccttgg
tcggctacatcagctgcttttccaggtgtgctgcagaagtttgttctcttggggacagtg
gtagccaaggctctacaagatggacgagtcttggacattcctttctctaaaaccttctat
aaactaattctcggacaggagttgagttcatttgacatccatttcgttgaccctgaactt
tgtaaaacactggtggaattgcaagctctggcacgtaggagaaaggttatctcagaatca
caaagtgatgtccgagcagctaagtgtgacttgagtttccgtggaacaaagattgaggac
ctttgtcttgatttttccctgcctggctacacggactatgttctctctcctcggtttgct
aatgatatggtaaatttgggtaacctcgaggagtatgtaaaggctattgtcaatgccaca
gtatgtaatgggatcaaaaaacaagtggaagcgtttcggtctggatttaacaaagttttc
cctattgaacatcttaagatatttaatgaagaagaactggaaactttgttgtgtggagaa
cgagatctctttaatatgaatgaagtcttggaccacatcaagtttgatcatggttatact
tctagcagcccaccagttcaaaatttgttggagattctgcatgagtttgacaaggagcaa
cagcgagcttttctgcaatttgtaacaggatgtcctcggctaccccctggcggtttggcg
tctctcagtcccaaacttaccattgtccgcaagcacggtagtgattcatcagaaacagac
ctgcctagtgtgatgacctgcgccaattatctgaaacttccaccttactcttccaaagaa
aagatgaaggagaagctgatctatgccataactgaagggcaaggttccttccatctctct
taa
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