Brassica napus (rape): 106401173
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Entry
106401173 CDS
T04128
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106401173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106401173
03041 Spliceosome [BR:
bna03041
]
106401173
03036 Chromosome and associated proteins [BR:
bna03036
]
106401173
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106401173
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106401173
Complex B
106401173
Complex C
U2 SnRNP specific factors
106401173
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
106401173
TFTC complex
106401173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
106401173
NCBI-ProteinID:
XP_013697088
LinkDB
All DBs
Position
C3:26228151..26235376
Genome browser
AA seq
1334 aa
AA seq
DB search
MMAAPEDESSAQSQSSSAATAAPTPPPPPSAGDHYLAKCVLPPSVVLQVAYGYFRSPSSR
DVVFGKETCLELVVIGEDGIVESVCEQNAFGTIKDLAVIPRSKMGKDLLAVLSDSGKLSF
LSFSNEMHRFSPIQHVQLSSPGNSTTQLGRMLTVDSSGLFLAVSAYHDRFALFSLSTSSM
ADIIHERIFYPSEDGGKTSSVEELSGTIWSMCFISKGFNESKSYDPVLAIVSNRKGSLLN
ELVLFRWNIKEESICLISEYVEAGPLAHSIVEVPHSSGFAFLLRIGDALLMDLRDPQNPC
CLVRTSLDLVPPASLVEEHFVEESCRVQDGDDEGLSNVAASALLKLSDWDPMFIDTESEI
GKLSSKHVSSWTWEPDHNYNPRMIICLDDGEFFVFGLVYDDDGVKINISECLYKGLPCKE
ILWVEGGFLATFAEMADGTVFKLGKEKLHWMSSIQNIAPILDFSVVDDQNEKRDQMFACC
GVTPEGSLRIIRSGVNVEKLLKTAPVYQGITGTWTVKMKLPDVYHSFLVLSFVEETRVLS
VGLSFKDVTDSVGFQPDVCTLACGLVADGLLVQIHQDAVRLCMANMDGSSPFVSSWFPEN
VSISLGAVAENLIVVSTSNPCFLSVLGVRSVSSHCCEIYEIQRVELQYEVSCISIPQKST
GKKRCKAAIPSGMERGYTFLIGTHKPSVEVLSFSEDDGGGLRVLASGMVSLTNTMGTAIR
GCIPQDVRLVLVDQIYVLSGLRNGMLLRFEWPSFSHSSGLNKEEMDIVVGERENLPINLV
LIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLHTARQSLSYTSISFQASTHATPVCS
SECPQGILFVAENSLHLVEMVHSKRLNAQKFHLGGTPRKVIYHSESKLLIVMRTDLCDAG
TSDICCLDPLSGSVLSSYKLKPGETGKSMELVRVGNEQVLVVGTSLSSGPAILPSGEAES
TKGRILILCLAHTQNSDSGSMTICSKDGSTSQRTSPFRDEQLSSSSLCSSPDDNSYDDDI
KLDEAEAWHLKLAAATTWPGMVLAICPYLDRFFLASAGNAFYVCGFPNDRPDKMKRFAVG
RTRFMITSLRTYLTRIVVGDCRDGVLFYSYHEDVKKLHQVYCDPAQRLVADCFLMDANSV
AVSDRKGSIAILSCKDHSDFEYSNPESNLNLNCAYHMGEVAMAIKKGGNIYKLPADDVLR
SYGLSKSTEAADDTIIAGTLLGSIFVFAPISREEYELLEAVQAKLVVHPLTAPVLGNDHK
EFRGRESPSQATKILDGDMLAQFLELTNRQQESVLSTPQPSPSSLKASSKQCTSPPLMLH
QVVQLLERVHYALH
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagctccggaggatgaatcttccgctcaatctcaatcatcttccgccgccact
gcggctcccactcctcctccccctccctccgccggtgatcattacctcgctaagtgcgtc
ctccctcccagcgtcgtcctccaggttgcttatggctacttccgctctccttcctcccgc
gacgtcgttttcggaaaggagacctgcctagagctggtggttataggtgaagacgggatt
gttgaatcggtgtgtgaacagaatgcatttggaactattaaggatttggctgttatacct
cggagtaagatgggaaaagaccttttggctgttctttctgattctggaaagctctctttt
ctctcatttagcaatgaaatgcacaggttctctcccatacaacatgttcaactttctagt
ccaggcaactcgacgactcaacttggaagaatgctcactgtagattctagtggtctcttt
cttgctgtcagtgcatatcatgatcgcttcgctctattttccctctctacatcgtctatg
gctgatattattcacgagaggattttctatccttctgaagacggaggaaagactagctct
gtagaagaattatctggtactatttggagcatgtgtttcatttccaaaggttttaatgaa
tccaagagttatgatcctgttcttgccattgtttctaataggaaaggatctctcctgaat
gaattggttttatttagatggaacatcaaagaggaatccatatgtttaatatcagagtat
gttgaagctgggcctctggcacatagtattgttgaagttcctcactcctctggattcgcc
tttctgttaagaattggtgacgctctcttaatggatctcagagatcctcaaaacccttgc
tgtttggttaggacatccttagatcttgttcctcctgcttcattagtggaagaacatttt
gttgaagagtcgtgtagagtacaagatggagacgatgagggtctttctaacgttgctgca
tctgcgttgttaaagctcagcgattgggatccaatgttcatagatactgaaagcgagatt
ggaaagttgagctctaagcatgtctcttcatggacttgggaaccggatcataactataat
cctcggatgattatttgcttagatgatggtgaatttttcgtgtttggactcgtatatgac
gatgatggtgtcaagattaatatatcagagtgtttgtacaaaggcttaccgtgcaaagaa
atattatgggtggaaggtgggttcctggccacgtttgccgaaatggcggatggaacggtt
ttcaaattgggaaaagagaagttacattggatgagttccattcaaaacattgctccgatc
ttggatttctcggttgtggatgaccagaacgagaaacgagaccaaatgtttgcttgctgt
ggcgtaacgcctgaaggctctttaaggattattcgcagcggcgttaatgtagaaaagctt
ctgaaaaccgcgcctgtttatcaaggaataactggtacttggactgttaaaatgaagctt
cctgatgtgtaccattcatttcttgttctgtcttttgttgaggagactagggttttatca
gttggattaagttttaaagatgtcactgattcggttggtttccagcctgatgtctgcacc
ttggcatgtgggcttgttgccgatggtttgttggtgcagattcaccaagatgcagtaagg
ctgtgcatggccaacatggatggttcttcaccgtttgtctcctcttggtttccagaaaac
gtcagtatcagcttgggggcggttgctgaaaatctgatagttgtgtctacgtctaaccct
tgtttcctctctgttcttggggtcagatcagtatcatctcactgctgcgaaatctacgaa
attcaacgggtggagttgcagtacgaagtctcctgcatctcaattcctcaaaaatctact
gggaagaagagatgcaaagctgcaattccttctggtatggagcgaggctatacgtttttg
atcggcacacataagccttctgttgaggtcctctccttctcagaagatgacggtggtggt
cttagagtccttgcctctgggatggtatcgctaacgaatacaatgggaacggctattcgt
ggatgtattcctcaggatgtaagactcgtgttagttgatcaaatctatgtcctttctggg
ttaaggaatgggatgctacttcgttttgagtggccttccttttcacattcatccgggttg
aataaagaagagatggacattgttgtgggtgaaagagagaatttacccatcaaccttgtg
ttaattgccacacgacgtatcggcatcacacctgtttttctggttccgttcagtgattca
ctagattcagatatcatagctcttagtgacaggccgtggttgttacacacagctcgacag
agcctttcctacacttccatctcgttccaagcttctactcatgcaactcctgtatgctcg
tctgaatgccctcaaggcattctttttgttgcagagaactctttacatctggtggagatg
gtgcatagcaaacggcttaatgcgcaaaagtttcaccttggaggcactccgcgaaaggtt
atctaccatagtgaaagcaaactattgattgtgatgagaactgatctgtgtgatgctggt
acgtctgatatatgctgcttggacccgctcagtggatcagtgctgtcatcctacaagctc
aaacctggagaaactggaaaatcgatggagcttgtacgcgtgggaaatgagcaagtcctt
gtggttgggacgagtttgtcatctggtcctgctatactacccagcggtgaagcagaaagt
acaaaagggcgaatactcattctctgcttagcacacactcaaaactcggatagtggttcg
atgacaatctgttcaaaagacggttcaacttcccaacgtacatcgccttttcgtgatgaa
caactatcaagcagtagtctctgcagcagtccagatgataacagctacgatgatgatatc
aaacttgacgaagctgaagcgtggcatttaaaattggcagctgcaaccacttggccgggt
atggtacttgcgatctgtccgtaccttgatcgtttcttcctggcgtctgctggcaatgct
ttctatgtatgcggtttcccgaacgatcgtcctgataaaatgaagaggtttgcggtgggg
aggacacgtttcatgataacatctctgcgcacgtacttgactagaatcgtcgttggggat
tgccgtgatggtgttctgttttattcttaccatgaggatgtgaagaaacttcaccaagta
tattgtgatccagcgcagcggttagttgctgattgctttctaatggatgccaattctgtt
gctgtatctgatcgcaaggggagtatagctatcctgtcttgcaaagaccattcagacttt
gagtattcaaatccggaatccaacctgaatctgaactgtgcttatcacatgggtgaggtg
gccatggctatcaaaaagggtggcaacatttacaaacttccagctgatgatgtgctgcga
agttatggtcttagtaaaagcactgaagcagctgatgatactatcatagctggcacacta
ttaggaagtatattcgtctttgctcctatttcaagggaggaatatgagctcctagaagcc
gtccaagcaaagcttgtggttcatccgctgactgctcctgttcttggtaatgatcacaag
gagttccgaggtcgagagagtccgtcccaagcgacaaagattttggacggtgacatgctt
gctcagttcttggagcttacaaatagacagcaggagtcagttttatctacacctcagcca
tcaccaagctcattaaaagcaagttcaaaacaatgtacttctccgcctctcatgctgcac
caagttgtacaattgctcgagcgtgtccattacgctctgcactag
DBGET
integrated database retrieval system
