Brassica napus (rape): 106401329
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Entry
106401329 CDS
T04128
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bna
Brassica napus (rape)
Pathway
bna03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106401329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106401329
03036 Chromosome and associated proteins [BR:
bna03036
]
106401329
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106401329
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106401329
PBAF complex
106401329
GBAF(ncBAF) complex
106401329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF7685
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
106401329
NCBI-ProteinID:
XP_013697283
UniProt:
A0A816L0J0
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Position
C5:complement(13369694..13373516)
Genome browser
AA seq
772 aa
AA seq
DB search
MPASEDRRGKWKRRKRGGRRPKQEEEDMEEEDEDNNNNEEMEDADNADELHQNGGATPDP
GPGVNEVVEDSGTRISDFPSVVRRVVIRPHASVTAVVAAERAGLIGESRGQGSLPSLENI
SYGQLQALSTVPADSVSLDTERSDGASSAYVISPPLIMEGEGVVKRFGDKVHVLPMHSAW
FAPNTVDRLERQVVPQFFSGKSPNHSPESYMHFRNAIVSKYTDNPEKALTISDCQGLVDG
VDNEDFARVFRFLDHWGIINYCATSQCHPEPSRDISDVREDSNGEVHVPSAALTSIESLI
KFNKPSCGHKSDSSVSCSDVDLPDLDIRIREHLCDNHCNHCSRPLPTVYFQSQKKEDVLL
CSDCFHHARFVAGHSCIDFVRVDTTKQYGDQDGENWSDQETLLLLEAVELYNENWVQIAD
HVGSKSKAQCILHFLRLPVEDGLLDNVELPGVAYPANPTNGYDHKGTDSNGALPGSSEQE
SETEINLPFVKSPNPVMALVAFLASAVGPRVASSCAHESLMVLSADDRSKSEGKDPSLVD
ETTCQNGAEAPTPLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRM
ELKLKQFAEIETLLMKECEQVEKTRQRFAAERARMVSARFGSPGQTSNTNNLQGMSLSTG
GGNNINTLLQQQQGSASSSQPSIIPGFSNNPQLHAQMQFMARQQQQQQAFSFGPRLPLNA
IQTNAGSTPSLFGNNQLNNNPAGPASINQPPFSHPMVRSSTGSGSGSGLGLN
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctgaagatagaagagggaaatggaaacggcggaagcgaggtgggaggaga
ccgaagcaagaggaggaagacatggaggaagaagacgaggacaacaacaacaacgaagag
atggaggatgctgataatgccgatgagcttcaccaaaacggcggcgcaacacccgatccg
ggacccggtgttaacgaggtagtcgaagattccggtactcgcatctctgatttcccctca
gtggtcaggcgcgtggtgatccggccacacgcctctgtaacggctgttgtggcggctgag
agagctgggttgattggggagagtagagggcaaggctcgcttccatctctggagaatatt
tcgtatgggcagttgcaggcgttatctactgtgccagctgattctgtgtcgcttgatact
gagaggagtgatggagcgtcttctgcttatgttatctctccacctcttattatggaagga
gaaggagttgttaaacggtttggggataaggttcatgtcttgcctatgcattcagcttgg
tttgcaccaaacacagtggatcggcttgagaggcaagtggtgccacagttcttctccgga
aaatctccaaatcattcaccagaaagttatatgcacttcaggaacgctattgtctcaaaa
tacacggataaccctgaaaaggcactgacgatatctgattgtcaaggattggtagatggt
gtcgacaatgaagattttgcacgagtgttccgttttcttgatcactggggaataatcaat
tactgcgccacttcccagtgtcatcctgagccttctagggatatatcagatgttagggag
gattcaaacggtgaagtccatgtgccatctgctgctttaacatctattgagagtttgatc
aaatttaacaagcccagctgtggacacaagtcagattcatccgtgtcatgttcggatgtt
gacctccctgacttggacataagaattcgtgaacacctatgcgataaccattgcaaccat
tgttctcgtccgctcccaactgtgtacttccaatcacaaaagaaggaggatgtactttta
tgctctgattgttttcaccatgcaagatttgttgctggacattcttgtattgactttgta
agggtggatacgaccaaacagtacggcgatcaagatggagagaattggagtgatcaggaa
actctcttgcttcttgaagctgtggaactctacaatgaaaactgggttcagattgcggac
catgttggttccaagtcaaaagctcaatgcattcttcattttcttcgattacctgtggag
gatggtcttttggataacgttgagcttccaggtgtagcttacccggcaaaccctacaaat
ggatatgaccataaaggaacagattcaaatggggctttaccaggatcttctgagcaagaa
tctgaaactgagatcaatcttcctttcgtgaagtctcctaatccggttatggcattggta
gcatttttggcatcagcagttggacctagagttgcttcgtcctgtgcccatgagtccctc
atggttttatccgcggatgataggtccaaatctgaaggaaaagatcccagcttggttgat
gaaacaacatgccaaaacggagcggaagcaccgactcctctgccacaggacaaggttatg
gcagcatttagagccggtctatcagctgcagcaaccaaagcaaagttgtttgctgatcat
gaggaacgtgaaatccaaaggctttctgcaaatatcgtaaatcatcagctgaagaggatg
gagctgaagctaaagcagtttgcagaaatcgaaacgttgttgatgaaagaatgcgaacaa
gtggagaaaacccgtcagagatttgctgcagaacgagctcgtatggtctcagcaagattt
ggatcacctggacagactagtaacactaataatctccaagggatgtctctatccactggt
ggtggtaacaacatcaatactctcctccagcaacaacaaggttcagcttcctcttctcaa
ccaagcatcatcccaggattcagcaacaacccacaactccatgcgcagatgcagttcatg
gcacgccagcaacaacaacagcaagcattctcctttggcccgagattacctctcaatgct
atacagaccaatgcaggatcaacgccttcactgtttggcaacaaccaacttaataataac
cctgcaggtccagcatccatcaaccaacctccatttagtcacccgatggttaggtcttct
actggttctggatccgggtctggcttagggttaaactaa
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