Brassica napus (rape): 106401479
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Entry
106401479 CDS
T04128
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
bna
Brassica napus (rape)
Pathway
bna03022
Basal transcription factors
bna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106401479
09124 Replication and repair
03420 Nucleotide excision repair
106401479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106401479
03036 Chromosome and associated proteins [BR:
bna03036
]
106401479
03400 DNA repair and recombination proteins [BR:
bna03400
]
106401479
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106401479
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106401479
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
106401479
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106401479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
AAA_11
PIF1
AAA_19
Motif
Other DBs
NCBI-GeneID:
106401479
NCBI-ProteinID:
XP_013697459
LinkDB
All DBs
Position
C8:572683..576503
Genome browser
AA seq
758 aa
AA seq
DB search
MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR
LSRPDSPIKLVYCTRTVHEMEKTLGELKILHDYQLTHLGAQAKILALGLSSRKNLCVNSK
VLAAENRDSVDAACRKRTASWVRALAAENPNVQLCDYFESYEKAADNALLPPGVYTLEDL
RAFGKNRGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKELQKESVIVFDEAHNID
NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLIEGLALRGDLSG
TDQWLANPALPNDILKEAVPGNIRRAEHFVHVLRRLLQYLGGRLDTENVEKESPVSFVSS
LNSQAGIEQKTLKFCYDRLHSLMMTLEITDTDEFLPIQTICDFATLVGTYARGFSIIIEP
YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLSFNPVVSRS
FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSVVPDGVVCFFV
SYSYMDGIIATWNETGILKEITQQKLVFFETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVVMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF
LRKMAQPYDKTGTMGRKTLLTQEDLEKMAETGVQDMVY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcaagatcgaagacgtaacggtctacttcccttatgacaacatatacccagag
caatacgaatacatggtcgaattgaaacgagccctagacgccaagggacattgccttctc
gagatgcccaccggaactggcaaaaccatcgccctcctctccctcatcaccagctaccgc
ctctctcgtcccgattctccgatcaagcttgtctactgcactcgtactgtccacgagatg
gagaaaacgctcggtgagcttaagatcctccacgactatcaactaacccatctcggcgcc
caggccaagatcctcgccctcggtctctcctccaggaagaatctttgcgttaactctaag
gttttagcggcggagaatcgcgattcagtggacgctgcgtgtaggaaacgcacggctagt
tgggttagagctttggccgcggagaatccaaatgtacaactctgtgactacttcgaaagc
tacgagaaggctgctgacaatgccttattgcctcctggtgtttatactttagaggatttg
agggcgtttggtaagaaccgaggatggtgtccttacttccttgccaggcatatggttcag
ttcgccaacgttattgtttacagctaccagtatttgctcgatcctaaggttgctggaatc
atatccaaggagttacaaaaggagtctgttattgtgtttgacgaggcccataatatagac
aatgtgtgtattgaagcactcagcgtcagtgtcagaagagttacacttgaaggagctaat
cgaaatcttaataaaattaggcaagaaattgataggttcaaggctacagacgctggaaga
ctgcgagctgaatacaaccggcttattgagggtttggcactgagaggggacttatctgga
actgatcaatggcttgcaaaccctgcactgcccaatgatattctaaaggaggctgtccca
gggaatattagacgggctgagcattttgtgcatgtgttacgccggttacttcagtacttg
gggggacggctagatactgagaacgtggagaaagaaagccctgttagctttgtatcctcc
cttaattctcaggctggaattgagcagaaaacactgaagttctgttatgaccggctccac
tctctcatgatgacccttgaaattacagataccgatgagtttttgcctatccagacaata
tgtgactttgcaactcttgttgggacatatgctcggggattttccatcatcattgagcct
tatgacgaaagaatgcctcatattccagatcctatattgcagttgagctgtcatgatgcg
tctctggctataaaaccggtgtttgatcgtttccagtcagtagtgattacgtcagggacc
ctgagcccaattgatctttatccccgtcttcttagtttcaatcctgttgttagtcgaagc
tttaagatgtcgatgacacgagactgcatctgtcccatggttttaactcgaggaagtgat
cagctccccgttagcaccaaatttgatatgagaagtgatccgggtgttgtgaggaattat
ggaaagcttttggtagagatggtatctgttgttcctgatggagttgtctgcttctttgtt
agttactcatacatggatggcattattgctacatggaatgaaactggaattctgaaggaa
attacgcaacagaaacttgtcttcttcgaaacgcaagatgttgtagaaacaacactggca
cttgacaattatcgcagggcttgtgattgcggaagaggtgcagtgttcttctctgtagcc
agggggaaagttgctgaagggatcgattttgatcgtcattatggaagactggttgtaatg
tttggagtgccttttcaatatacattaagcaagatattacttgcacgattggagtatttg
cgtgatacatttcaaataaaggaaggcgatttcctaacgtttgatgccttgaggcaagca
gctcaatgcgtggggcgagtaatccgatcaaaggctgattatgggatgatgatatttgca
gacaagagatatagccgtcatgacaagcgttccaaattaccaggctggatactatctcat
ctgcgtgatgcacacttgaatttaagcactgacatggctattcatattgcccgagagttc
ctaaggaaaatggctcaaccgtacgataagacgggaactatgggcaggaaaactctgtta
acacaagaggatttggagaagatggctgagaccggagtgcaagacatggtttattag
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integrated database retrieval system
