Brassica napus (rape): 106401765
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Entry
106401765 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106401765
09122 Translation
03013 Nucleocytoplasmic transport
106401765
03015 mRNA surveillance pathway
106401765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106401765
03041 Spliceosome [BR:
bna03041
]
106401765
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106401765
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106401765
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106401765
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106401765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
Cas3-like_C_2
PP2C
Motif
Other DBs
NCBI-GeneID:
106401765
NCBI-ProteinID:
XP_013697796
UniProt:
A0A078J3H2
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All DBs
Position
C5:48438882..48440516
Genome browser
AA seq
228 aa
AA seq
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MAARRGGRELPMEDVCYYKWPLPGADKFGLFCVCDGHGGAGAANRSLDDHQYEHYIKLSE
MEKNCKLNDLLDALDFNQVVIFVKSVNRAGELNKLLIECNFPSICFHSGMSHEKRLTHYK
SFKEGHKRILVATDLVGRGIDIERVNIVINYDIPDSADTYLHRVGRAGRFGTKGLAITFV
ASGSDSEFMCMSQNFFFLRTSLRFYHWRKKNLIRLTWVLNFSNHKINY
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacgtcgaggaggcagggaacttccaatggaagatgtttgttattacaagtgg
ccgcttcctggggctgataagtttgggctgttttgtgtttgtgatggacatgggggagca
ggggctgcaaacagaagcttggatgatcaccaatatgagcactacatcaaactgagcgag
atggagaagaactgcaagttgaatgaccttcttgacgcattggacttcaatcaagttgtc
atatttgtgaagagcgttaacagagctggggagctgaacaagttgcttattgaatgcaat
ttcccctcaatatgttttcactctggcatgtctcatgaaaagaggctgactcactacaaa
agtttcaaggaagggcacaagaggatccttgtggcgacagacttggtaggaagaggcatt
gacattgagcgtgtcaacattgttatcaactatgacataccagattctgctgatacatat
cttcacagggtcgggagagctggtaggtttggaacaaagggtcttgcgatcacatttgtg
gcatcaggttcagattctgaattcatgtgtatgtctcagaattttttttttttaagaacc
tcactgaggttctaccattggaggaagaaaaatttaattagactaacatgggttctaaac
ttttcaaatcacaaaattaattactaa
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