Brassica napus (rape): 106401784
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Entry
106401784 CDS
T04128
Name
(RefSeq) protein LHY-like
KO
K12133
MYB-related transcription factor LHY
Organism
bna
Brassica napus (rape)
Pathway
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106401784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bna03000
]
106401784
Transcription factors [BR:
bna03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
106401784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
DUF5134
Motif
Other DBs
NCBI-GeneID:
106401784
NCBI-ProteinID:
XP_013697818
UniProt:
A0A078FL85
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Position
C5:475058..478940
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AA seq
624 aa
AA seq
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MDTNTSGDELLTKARKPYTITKQRERWTEDEHDRFLEALRLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFTKLEKEAEAKGIPVCQALNIEIPPPRPKRKPNTPYPRKPGNNGPSSSQVPS
SAKHVSSASSSQCNQAFLDLEKVPISEETSNKKENQDDNCSGVSTVNKCPLPKKVTQPSL
RKESADNGTSKKASNVESAKCTQFQFHPPGMVSQDLMFCPMGDRVHGHVNLPATTTSSAT
TTTTTSQQAFPACPSQDSFLHFSSTFPNLIISSLLQNPAAHAAATFAASVWPYSNVGNSG
GDSSTQMSSSPPNVAAIAAATVAAATAWWASHGLIPVCAPPAPVTCLPLPTFAVPTQATD
KIDTVENDQLPLEKQNTALQDKKMASKSPASSSDDSEETGVTKLNAGSKTNGDKEEVVVD
AAAAAAAALHDPNASPKKKLVDRSSCGSNTPSGSDAETDALDKMEKDNEDVKEADANQQP
SVIELSNRRSKIRDNNNNQTTDSWKEVSQGGRKAFQALFARQRLPQSFSPPQVAAENVNG
KQSDTSMPMAPDLNKVQDSCDADQESGVVMIGDGTGKSLKTRQSGFKPYKRCSMEAKESQ
DGNANNESDEKVCKRIRLEGEAST
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggatacaaatacatccggagatgagttattaaccaaggcaagaaagccgtatactatt
acaaagcagcgggaacgatggacagaggatgagcatgataggtttcttgaagccttgagg
ctttatggaagggcctggcaacgtatagaagaacatattgggacaaagactgctgttcag
ataagaagtcatgcacaaaagttcttcacaaagctggagaaagaggcagaagctaaaggc
attcctgtttgtcaagctctcaacatagagatcccacctcctcgtcctaaaaggaaaccc
aatactccttatcctcgtaaacctggcaataatggcccatcttcctcgcaagtaccatca
tcagcaaaacatgtatcctcagcctcttcttcacaatgtaaccaggctttcttggatttg
gaaaaagtgcccatctctgaggaaacatcaaataagaaagaaaatcaagatgataactgc
tcaggggtttctactgtaaacaagtgtcccttgccaaagaaagttactcaaccgtctcta
agaaaggaaagtgccgataatggaacaagtaagaaggcgtcaaatgtggagagtgcaaaa
tgcactcagtttcagtttcatcccccaggtatggtctctcaagacttgatgttttgtcct
atgggagatcgtgttcacgggcacgtgaatcttccagctaccacaacatcctctgctact
actactacaactacttctcaacaggcgtttcctgcgtgcccttcccaggattcgtttctc
cacttctcctctactttccccaatctcattatctcaagcctcctacagaatcctgcagct
catgccgcagccacattcgctgcttcggtctggccctattccaacgtcgggaactcggga
ggagattcatcaacgcaaatgagctcttctcctccaaatgtagctgccatcgctgctgct
acggtagctgccgcaactgcttggtgggcttctcatggacttattcctgtatgtgctcct
cctgctccagtcacttgccttccattaccaacctttgcagttccaactcaggctacggat
aagatagataccgttgaaaatgatcaactaccgctggagaaacaaaacacagctctgcaa
gataaaaaaatggcttcaaaatctccagcttcatcatccgacgattcagaagagactgga
gtaaccaagctaaacgctggctcaaagacaaatggtgacaaggaggaagttgttgttgat
gctgctgctgctgctgctgctgctttgcatgatccaaacgcttccccaaagaaaaagctg
gtggaccgctcatcgtgtgggtcaaacacaccttcagggagtgacgcggaaacagatgcc
ttagataagatggagaaagataacgaggatgtgaaggaggcagatgcaaaccagcagcca
agtgttattgagttgagcaaccgtcggagtaaaatcagagacaacaacaacaaccaaact
actgattcgtggaaagaagtctcccaagggggtcgtaaagcgtttcaggctctctttgca
agacagagattgcctcagagcttttcacctcctcaagtggctgcagagaatgtgaatggg
aagcaaagtgacacgtcaatgccgatggctcctgatctcaacaaggttcaagattcttgt
gatgcagaccaagagagtggagtagtaatgataggtgatggaacggggaagagccttaaa
acgagacaatcagggtttaagccatacaagagatgttcaatggaggcgaaagagagccaa
gatgggaacgcaaacaatgaaagcgatgaaaaagtctgcaagaggattcgattggaagga
gaagcttcaacataa
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