Brassica napus (rape): 106402159
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Entry
106402159 CDS
T04128
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
bna
Brassica napus (rape)
Pathway
bna03082
ATP-dependent chromatin remodeling
bna03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106402159
03083 Polycomb repressive complex
106402159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106402159
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
106402159
Histone modification proteins
HAT complexes
HATB complex
106402159
HDAC complexes
Sin3A-HDAC complex
106402159
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
106402159
PRC2.2
106402159
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
106402159
Heterochromatin formation proteins
Other heterochromatin formation proteins
106402159
Chromatin remodeling factors
NuRD complex
106402159
NuRF complex
106402159
NuRF complex (fruit fly)
106402159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_DCAF12
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_TEP1_C
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_HPS5
eIF2A
Beta-prop_WDR19_1st
Ice_binding
Beta-prop_SCAP
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
106402159
NCBI-ProteinID:
XP_013698292
LinkDB
All DBs
Position
A7:complement(891160..894415)
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AA seq
498 aa
AA seq
DB search
MESDEAAAAASPQGSGGTVTPAPKKRGRKPKIKEDSQTKEQSGKESGGKKTKQSVDEKYT
QWKGLVPILYDWLANHNLVWPSLSCRWGPQLDQATYKNRQRLYLSEQTDGSVPNTLVIAN
CEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIIATHTDSPDV
LIWDVETQPNRHAVLGAATSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSI
QDHITTVGTDSKSSGSIIKQTGEGGDKTESPSVAPRGVYHGHDDTVEDVAFSPTSAQEFC
SVGDDSCLILWDARTGTSPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLYDRRN
LTSNGVGTPIYKFEGHRAAVLCVQWCPDKSSVFGSSAEDGLLNIWDYDRVSKKSDRAAKS
PAGLFFQHAGHRDKVVDFHWNAADPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPEEEV
LAELETFKSHVMTCASKP
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggagagcgacgaagcagcagcagcagcgtctcctcaagggagcggaggaaccgtaact
ccggcgccgaagaagagaggccggaaacctaagatcaaggaggattcgcagacgaaggag
cagagcgggaaggagagcggggggaagaagacgaagcagagtgtggacgagaagtacact
cagtggaaaggtctcgtgcccatcctctacgactggctcgccaaccacaacctcgtctgg
ccttccctctcttgcagatggggtccacagcttgaccaagcaacttacaagaatcgccag
cgtctttacctctctgaacaaactgatggtagtgtgcccaacactcttgtcatagctaat
tgcgaagttgttaagccaagggtcgctgcagctgagcacatatctcagttcaatgaagaa
gcacgttctccatttgtgaagaagtacaagaccatcattcaccctggcgaggttaacaga
atcagggaactcccacagaacagtaagattattgctactcacaccgacagtcctgatgtt
ctcatttgggatgttgaaacccaaccaaaccgtcatgctgtgcttggggctgcaacttcc
cgtccggatttgatactaactggacaccaagacaatgctgaattcgctcttgcaatgtgc
ccaaccgagccctttgtcctctctggaggcaaggacaagtcagttgttttgtggagtatc
caggaccacatcacaacggttggtacagattccaaatcatctggatcgatcatcaagcag
actggtgaaggtggtgataagactgagagtccttctgttgccccccgaggtgtatatcat
ggccatgacgacacagttgaagatgtggcattcagcccgaccagtgcgcaagagttctgc
agtgttggtgacgattcttgccttattctatgggatgcaagaactggcactagccctgtc
acgaaggttgaaaaggctcacgatgctgatcttcattgtgtcgactggaatcctcatgac
gacaatctgatcctaacagggtctgcagacaacactgtccggttgtatgatcgcaggaac
cttacctcaaatggagttggtacgcccatctacaaatttgaaggccacagagctgctgtt
ctttgcgttcagtggtgtcctgataagtcatctgtttttgggagttctgctgaagatggt
ctcttgaacatctgggattatgacagggtcagtaagaagtctgatcgtgcagctaaaagc
cccgctggtctcttcttccagcatgctggtcacagggacaaagttgttgatttccactgg
aatgcggcggacccttggactattgttagtgtgtctgatgactgtgagactactggtgga
ggtggaacattgcagatatggcggatgagtgacttgatttacaggccggaagaggaagtt
ttggcagagttggaaacgttcaagtcgcatgttatgacatgtgcctctaaaccttga
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