Brassica napus (rape): 106402245
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Entry
106402245 CDS
T04128
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
bna04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106402245
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106402245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106402245
04121 Ubiquitin system [BR:
bna04121
]
106402245
03400 DNA repair and recombination proteins [BR:
bna03400
]
106402245
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106402245
Spliceosome [BR:
bna03041
]
Complex B
Other components
Prp19 complex
106402245
Complex C
Prp19-CDC5 complex
106402245
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
U-box type E3
106402245
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
106402245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_DCAF12
zf-Nse
Beta-prop_Aladin
eIF2A
Beta-prop_DCAF4
NBCH_WD40
WD40_like
PAS_11
Beta-prop_Nup120_160
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
106402245
NCBI-ProteinID:
XP_013698395
LinkDB
All DBs
Position
C5:1459836..1464266
Genome browser
AA seq
522 aa
AA seq
DB search
MNCAISGEVPVEPVVSKKSGLLYEKRLIETHISDFGKCPVTGEPHTIDDIVAVKTGKIVK
PKPLHTASIPGLLGMFQTEWDGLMLSNFSLEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARQLLSEAERQLPAAPAVATENATLSNGKRAADGDDQGPDAKKMRLGISGEVITEL
TDCNAALSQQRKKRQIPPTLASVDALEKFTQLSSHPLHKTSKPGIFSMDILHSKDVIATG
GIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGSSEDGSYA
CRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDMSSGLCLAQVTDDSEKVDYTAAA
FHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHTGEITSVSFSENGYFLATSALDGVRL
WDLRKLKNFRTFEFPNANSVEFDHSGSYLGIAASDIRVFQTASVKAEWNPVKTLPDLSGT
GRATCVKFGPDAKYVAVGSMDRNLRIFGLPSNDSTEDSAQDS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcgcaatttccggagaagttccggtggagcccgtggtttcgaagaagtctggt
ttgctctacgagaagcgcctaatcgagacgcacatatccgattttgggaaatgcccagtt
actggtgagccgcataccattgatgacattgttgccgtcaaaactggaaagatcgtaaag
ccaaaaccattacacacagctagcatccctggattgctcggaatgttccagactgaatgg
gatggtttgatgctatcaaatttttcacttgaacaacaactgcatactgcgaggcaagag
ctgagtcatgctttgtatcagcatgatgctgcttgtcgtgtgattgctaggcttaaaaaa
gaaagagacgaggcacgacaactgctttcagaggctgagaggcaattacctgcagccccc
gcagttgccacagagaatgctactcttagtaatggtaaacgagctgccgatggagatgac
caaggtcccgatgcaaagaaaatgcgtcttggaatttcgggtgaagttattacagaactg
acagattgtaatgctgctctttcccagcagcgtaaaaagagacagatccctccaacgttg
gcttcagttgatgctttggagaagttcactcaactctcaagccacccacttcacaagacc
agcaaacctggtattttttcaatggacatcctacattctaaggatgtcattgcgactgga
ggaatagatacaactgccgttctctttgaccgtccctcaggacaaattttgtcaacgctg
actggtcattcgaagaaggttacgagtattaagtttgtaggtgacactgatcttgttttg
actgcttcatcagacaagacagtccgtatctgggggagttccgaggatgggagctatgcc
tgtaggcatacattgaaagatcactctgcagaggtgcgagcggtcactgtccatgcaacg
aataaatactttgtgtcggcatcgcttgacagcacgtggtgcttctatgatatgtcctcc
ggtttatgccttgcccaggtcacagatgattccgagaaggtggattacacggctgctgct
ttccatcctgatggtctcattcttggaactggtaccgctcagtctattgtcaaaatttgg
gatgtaaagagtcaggcaaacgtggcgaagttcggtggacacactggagaaatcacatct
gtatcattttccgaaaatggttatttcctcgcgacttctgcgctggatggtgttagattg
tgggacctgcgcaagctaaagaacttccgaacatttgaatttccaaatgcaaactcagtg
gagtttgaccatagcggatcttaccttggcattgctgcttcagatataagagtattccaa
acggccagtgttaaagcagaatggaacccagtcaagacacttcctgatctatccggtaca
ggtagagcaacatgtgttaagtttggtccggacgccaaatacgtagcagtcggttcaatg
gaccgtaatctcaggatattcggcttacctagcaatgacagcactgaagattctgcacaa
gattcatga
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integrated database retrieval system
