KEGG   Brassica napus (rape): 106402247
Entry
106402247         CDS       T04128                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
bna  Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:bna00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bna03036]
    106402247
   03400 DNA repair and recombination proteins [BR:bna03400]
    106402247
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    106402247
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     106402247
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT HEAT_EZ HEAT_2 TOR1L1_N HEAT_EF3_N
Other DBs
NCBI-GeneID: 106402247
NCBI-ProteinID: XP_013698396
LinkDB
Position
A2:complement(26206722..26212599)
AA seq 1123 aa
MAALNNLTEHLEAFVDVTRSPTHHAESLRAIATSLEKSVLSINQLVVEMDMYLTTTDDVV
RARGILLLAEMLDYLKPKPLDNAVVNSLVGFFTAKLAEWRSVRGALTGCLALIKRKGVAG
LVTAVDAEAVAKSMAQSVQVQSLALYDRKLCFELLECLLEQYPEAMINLGDLMVYATCEA
IDGEKDPPCLMVAFHVVELLARLFPSPSGPVASEASDLFEFISCYFPLHYTHTKGDETSI
PREDLSRGLSLAISSTPFFEPYAIPLLLEKLSSSLPVAKVDSLKCLKDCAVNYGVSRMKK
HYEGIWSAIKDALYASTGTDLSFGLESLTSPGFEMGEIHREAVNLLQRLVKQDISFLGLV
ADDIRVKMIFDTISRYSRYEEMLDTSKLEVLVVSQILSVSARASVESCNTIFETFFVRLM
NTLGIVEKTSSGDLVHNENSTVSTRLYHGGLHLCIELLTASKDLIPSSEEDSSTPESAQQ
SWCSIVNRFSVSLIEAFTSAVQSSNDDCSADAYLGVKGLLAMGMFRGGSSPVSRSEFEKI
LTTLTSIITANSAKTVKWELALKALVCMGSFIDQYHESEKAMSYMGIVVENLVSLVRSSH
CSLPHPMILEATSEVCSTRPTYVEKMVQGFEEAFCSSFSDFCVNGNFKSIENCSQLLECV
TNKLLPRLTEIDGLEKSLVHFAISMWNQIESSVVFSYDFNGREFVEAAMKTMRQIVGVAS
VDSQNSIIQKAYNVISSSTLPAMESIPLTFAALEGLQRDLSTRDELILSLFASAVIGASP
MASFADVKSLIKLFMVSSLKGYISAAQALGSMVNKLGTGLEEACDTIFHESSASGNNTSS
VDSSKSIGGSETLLAKICLGFYGSLDLQTRAITGLAWIGKGLLMRGDKRVNEIAHVLVEC
LKSTNSSGNALHPSALKHAADAFLTLMSDSEVCLNRKFHAVIRPLYKQRFFSITVPILES
LIVNSQTPLSRTMLHVALAHVISNVPVTVILDNTKKLLPVILEGLSVLSVDSEHKETLFS
LLLVLSGTLTDIKGQQSVSDNAHRIIECLVKLTSYPHLMVVRETAIQCLATLLELPHRRI
YPFRREVLQAVTKALDDPKRRVREEAIKCRQAWTSISSRSTPF
NT seq 3372 nt   +upstreamnt  +downstreamnt
atggctgcactgaataatctcaccgagcatctcgaagctttcgtcgacgtcactcgttcc
cctactcaccatgctgagagtctgagagcgattgctacttccttggagaagagtgtcttg
tctataaaccaattggtcgtggagatggacatgtatttgacgaccactgatgatgttgtc
cgagcacgagggattctcttgcttgcggagatgctggattatctaaagcctaagcctttg
gacaatgcagttgtcaatagtctcgttggattctttaccgctaagctggcagagtggaga
tcggtgcgcggtgcacttactggttgcttggctctgattaagaggaaaggcgtagctggt
ttggtcactgctgttgatgcagaagctgtggcgaagtcaatggcacagagtgttcaagtg
cagtctttagcactgtatgatcgcaagctctgttttgaactgttggagtgccttctagag
caataccctgaagctatgataaatttgggagatttgatggtgtatgctacatgcgaggcc
atcgatggagaaaaagaccctccatgcttaatggtagcttttcatgtagtggagcttttg
gctcgattgtttcccagtccctccggtccagttgcgtctgaggcatctgatctttttgag
tttataagttgctacttcccacttcattatacgcatacaaaaggtgatgaaactagtatt
ccaagagaagacctctcaaggggactatccctggcaatctcttccactcctttttttgaa
ccgtatgctattccgttgcttcttgaaaagctttcatcctctctaccagtcgcaaaggtt
gattctttgaaatgtctgaaagattgcgctgtgaactatggagtaagcagaatgaagaag
cactatgaaggcatttggtcggcaataaaagatgcactttatgcttccaccgggacagat
ttgtcctttggtctagaatccctcactagtccagggtttgaaatgggtgagatccacaga
gaagctgttaatctccttcagaggcttgttaagcaagatatctcgtttttaggtcttgtt
gctgatgatatacgtgtaaagatgatcttcgataccatttctagatactcgcggtatgaa
gaaatgcttgacacgagcaaactggaggttcttgttgtcagtcagatactgtctgtgtct
gccagagcttctgttgagtcatgcaatacaatctttgaaacctttttcgtccgccttatg
aatactctagggattgtagagaaaacgtcatctggtgatcttgtgcacaacgaaaactcg
acggtttctactagactctaccatggaggtcttcatctttgcatcgaacttcttacagca
tcaaaagatcttattccgagttctgaggaagattcttcaacacctgaaagcgcgcagcaa
tcatggtgctctatagttaacaggttctcagtttcactaatcgaggcatttacttctgca
gtacaaagctctaatgatgactgtagtgcagatgcatatcttggagttaagggtttgctg
gctatgggtatgttccggggcggctcttctcctgtatcgagatctgaattcgagaagata
ttgacgactttaacatcaatcatcacagccaatagtgccaaaacagtgaaatgggaactg
gcattgaaagcgctggtctgcatgggttcatttattgatcagtatcatgagagtgaaaag
gctatgagctacatgggtatagttgtagaaaatttggtctcgctggttcgctctagtcat
tgttctcttccacatccaatgatattagaagcaacttcagaagtttgctctactaggcca
acgtatgtagagaaaatggttcaaggatttgaagaagctttctgttccagtttctctgat
ttctgtgtcaatggaaacttcaagtcaatcgaaaattgttctcagctcctggagtgtgtg
accaataaattgcttccacgtctgacagagatcgatggtctcgagaaaagcttggtgcat
tttgctatcagtatgtggaatcaaattgaatcctctgtcgttttcagttatgattttaat
ggcagggagtttgttgaggcagcaatgaaaacaatgcggcaaattgtaggagttgcttcg
gtagactcacagaatagtataatccaaaaagcttataatgtgatctcatcaagcacgctt
ccagcgatggagtcgatacctctgacctttgctgcgttagagggtttacaacgtgacctg
tccactagggatgagttgatactttcactatttgcgtcggctgtcataggtgcatctccc
atggcgtcctttgcagatgtgaaatcacttataaagctgtttatggtatcctctctcaag
ggttatatctcagcggctcaagctttgggttcaatggttaacaaattgggaacgggtttg
gaagaagcatgtgatacaatatttcacgagagttctgcatctggaaacaatacttcttct
gttgactctagtaaaagtatcggtggaagtgagacacttttggcaaagatatgtttaggt
ttctacggttcgctggaccttcagacccgcgccatcacaggtctagcgtggattgggaaa
ggtttactcatgaggggtgataaaagagttaatgagatagctcatgtacttgtggaatgc
ttaaaatcaactaacagttccgggaatgctctacatccttctgccttgaaacatgcagct
gatgcattcctcacactaatgtctgattcggaagtgtgtctgaacagaaagtttcatgca
gttatacggccactctataagcaacggtttttctctataacagtccctattttggagtcg
ttgattgtgaattcccagactccactctcaagaacaatgttgcatgtcgctctcgcgcat
gttatatcaaatgttccagtcacggtcatactggacaataccaaaaagctgctcccggtg
atactggaaggcttgtctgtcttgagcgttgactctgagcataaagaaacacttttcagt
ctattactggttttatctggaacgcttactgatattaaaggacaacaatctgtcagtgat
aatgcacacagaatcattgaatgcttggtcaagcttacatcatacccacatctaatggtt
gtaagggagacggcgattcagtgtcttgctactttgttggaattgccccatagaagaatc
tatcctttcagaagagaggttttacaagcggtaacaaaggcacttgatgatccaaaacgt
agagttcgggaagaagcgattaaatgcaggcaggcttggacgtcgatctcatccaggagt
acccctttctga

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