Brassica napus (rape): 106403184
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Entry
106403184 CDS
T04128
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106403184
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106403184
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106403184
NCBI-ProteinID:
XP_013699479
UniProt:
A0A078HAS2
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Position
A2:26520463..26524429
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AA seq
417 aa
AA seq
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MATTQVLVLFASALLLTMLFAGVDSTRSNETWHEHAVENPDEVAAMVDMSIRNSTMRRRL
GYFSCSTGNPIDDCWRCDRKWQLRRKHLAVCSIGFGRNAIGGRDGRYYVVSDPNDDNPVN
PKPGTLRHAVIQVEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQYV
TNIIIHGIHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADG
LIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGRGLIQRMPRCR
HGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGHWQWKHWN
WRSEGDLFLNGAFFTRSGSGRGASYARASSLAAKSSSLVGVITSNAGALNCRGGRRC
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgcaagtacttgtcctctttgcttcagcattactcctaacaatgctcttt
gctggcgtcgattccaccaggtccaatgaaacatggcatgaacatgcagttgagaatcca
gacgaagtagctgccatggtggacatgagcattcggaacagtaccatgcggagaaggtta
ggttacttctcttgctccaccggtaaccccatcgacgattgctggcgttgtgaccggaaa
tggcaactccggcgaaaacacctagccgtctgctcaatcggattcggacgcaacgcaata
ggcggcagagacggacgttactacgtagtaagcgaccctaacgacgataacccggttaac
cctaaaccgggtacactccgtcacgccgtgatccaagtcgagcctctttggatcgtcttc
aaacgcgacatggtcataacactgaagcaagaactcatcatgaacagcttcaagacgata
gatggtcgtggcgtcaacgtccacatagctaacggtgcatgcatcacgatacagtacgtg
acgaacattatcatacatgggattcatattcatgactgcaaacctactggtaacgctatg
gtgagaagctctccgtcgcattatgggtggaggacgatggctgatggtgatgggatctcg
atctttgggtcgagtcatatttggattgatcacaactcgctctctagttgcgctgatggg
cttattgatgctgttatggcttccactgccattactatctctaacaattactttacgcac
cataacgaggttatgttgttggggcatagtgatacttacacaagggacaaggtgatgcag
gttactattgcttataaccattttggtagaggtcttatccagaggatgccaaggtgtagg
catggatacttccatgtagtaaacaatgactacacacattgggaaatgtatgcaattggt
ggcagtgcaagtcccaccatcaatagtcaaggaaacagatatcttgcccctagaaaccgc
tttgctaaagaggtgacaaagagagactatgcaggacactggcaatggaagcattggaac
tggagatcagaaggagatcttttcctaaacggtgctttcttcacacgttctggttcagga
cgtggagctagctacgctagagcttcaagtttggcagccaaatcgtcatcccttgttggc
gtcattacctctaatgctggcgctcttaattgcagaggtggtcgccggtgttaa
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