Brassica napus (rape): 106403999
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Entry
106403999 CDS
T04128
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106403999
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106403999
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
106403999
NCBI-ProteinID:
XP_048635761
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Position
A5:23307789..23310564
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AA seq
458 aa
AA seq
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MRLKKKTSILIFSVFILQIFTYSKALDVTQYGAVGDGVTDDSQAFLKAWEDVCGGAGDGQ
LIIPAGMAFMLQPLKFEGSCKSTPIVVQILGNLVASSRGKWKGDKDQWILFSDIEGLVVE
GNGEINGQGSSWWEHKGSSRPTALKFKSCNNLRLSGLTHVDSAMAHIHINGCNDVTISNL
RINAPESSPNTDGIDVAVSSNVIIQDCVIATGDDCIAINSGTANIRISGIDCGPGHGISI
GSLGKDGEIASVEDVCVQNCNFRGTMNGARIKTWPGGSGYARRITFNGITLDNVENPIII
DQHYNNGDSDKSTDDKSSAVEVSKVVYSNFVGTSRSEYGVNFRCSTRAPCTEIFLKDVKI
ETASSGMGQVAQGQCLNVRGGVSTLAVPGLECLALSTDMLSWGTMPEQACMLPQQSVQPN
TRPLQDPLWVYGSRGERLGVYGVVLTSLISFGFSYVLG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttaaagaagaagacttcgatcttgattttctcagtgttcatcctccagatcttc
acatattcgaaagctttggatgttactcaatatggagctgttggagatggagttacagac
gattctcaggcgttcttgaaagcctgggaagatgtctgtggcggggcaggagatgggcag
cttatcattccggcaggaatggcatttatgttgcagcccttgaagtttgagggttcttgc
aaatcgacccctattgttgttcagattttgggcaatcttgttgcatcaagtagaggaaaa
tggaaaggagacaaagatcaatggattctcttctcagacatagaagggcttgtggttgaa
ggtaacggcgaaataaacggccagggttcgagctggtgggaacacaaaggcagttctaga
ccaaccgcattgaagttcaagagctgcaacaatcttagacttagtggcttaactcacgta
gatagtgcgatggcacacattcacataaacggttgcaacgatgtaaccatctcaaatctc
cggataaatgcacctgaatcaagtcctaacaccgatggcatcgatgtagcggtttcatct
aacgttatcatccaggattgcgtaatcgccactggtgacgattgcattgcgattaactcg
gggacggctaacatcagaatatccggtatagattgcggaccaggccatggaataagcata
ggaagcttaggaaaagatggagagatagcttcagtggaggatgtatgcgtccaaaactgt
aactttagaggaactatgaatggagctaggatcaaaacctggccgggaggatctggttac
gcaagaaggattactttcaatggaattactctagataatgtcgagaatcctatcataatc
gatcagcattacaacaatggagattctgataagtccacagatgataagtcctcggcggtg
gaagtgagcaaagttgtgtatagtaacttcgtggggacgtccagatcagagtacggtgtt
aactttaggtgcagcacgagagcaccatgcacagagatttttctgaaagatgtgaaaata
gaaacggcatcgtcaggaatgggacaagtagcgcaaggacagtgtttaaacgtgagaggt
ggtgtgtctacacttgcggtaccaggtttagagtgtttagcactttctacagatatgttg
tcatgggggacaatgccggaacaagcttgtatgttgccgcagcaatcagtgcaaccgaac
acacgaccgttgcaagatccattatgggtttatggaagcagaggagaacgattaggagta
tatggggtcgtgttaacttcattaatctcttttggttttagttatgttttaggttag
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