Brassica napus (rape): 106404002
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Entry
106404002 CDS
T04128
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
bna
Brassica napus (rape)
Pathway
bna03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106404002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106404002
03036 Chromosome and associated proteins [BR:
bna03036
]
106404002
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106404002
Coactivators
SAGA/TFTC/STAGA complex
106404002
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
106404002
STAGA complex
106404002
TFTC complex
106404002
SAGA complex
106404002
SLIK complex
106404002
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
DSE1_N
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
ASA1
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_WDR19_1st
PAC11
Beta-prop_NOL10_N
Beta-prop_Vps41
Beta-prop_SPT8
CFAP251_N
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Tricorn_2nd
eIF2A
RAB3GAP2_N
SHKBP1_KCTD3_C
LisH
Cytochrom_D1
HTH_SpdB_C
Motif
Other DBs
NCBI-GeneID:
106404002
NCBI-ProteinID:
XP_013700223
UniProt:
A0ABQ8EFC8
LinkDB
All DBs
AA seq
666 aa
AA seq
DB search
MDPEQVDEFVMGYLKKKGFNSAAKHLQESLHNNNGSTFSSIDYHNDPELNKLIRSFSQSE
NDPSRYREGYSKLRSWGYNSLDLYKHELVRVMYPVFIHCYMDLVGKGHTQEARSFFNSFR
KDHEMVHLRDLQKLGGVLAPSHLQEMEFARSLRQSKINIKICQYSYDLLLQYLHRTESTL
MLGIINEHINFQVYSGQPNSASDDIEAVTIVGSFHETADHVNQKEIHWGLLEDSLEDRLE
KTGGLLSDSEKGQGESKAGDMDDSKKRSAEIGKQGSSIKKLKKDKAGTATTKVARQETST
VLSSMPRVKPELAMPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNSSSI
SHDGSLVAGGFSDSSIKVWDMAKIGQAGSCGLQDENNQTVGLNGRRNYTLLVGHSGPVYS
ATFSPPGDYVLSSSADTTIRLWSTKLNANLVCYKGHNHTVWDAQFSPFGHYFASCSHDRT
ARIWSMDRMQPLRMMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGH
RSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWTLSYSGEGSLLAS
GSADCTVKLWDVSSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAAGA
ISKPSS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaagtagacgagttcgtcatgggctacttgaagaagaaaggcttcaac
agcgctgctaaacatctccaagaatctcttcacaataacaatggcagcaccttcagctct
atcgattatcacaacgaccctgagctcaacaagctcatccgctccttttcccaatcagag
aatgatccatctcggtaccgggaaggttacagcaagctaaggtcatggggttataactca
cttgatctttataagcatgagttggttcgagtgatgtatcctgtgtttattcattgttac
atggatctagtggggaaagggcacactcaagaagcgagatccttctttaacagcttccgc
aaagatcatgaaatggtacatctacgggatcttcagaagctgggaggcgttcttgctcca
tctcatctacaggagatggaatttgctcgttctcttagacaaagcaagatcaacatcaaa
atttgtcagtattcgtatgatttattgcttcagtacctacatagaacagagtctactcta
atgcttggtattatcaacgagcacatcaatttccaagtctactcaggacagcctaactcc
gcatctgatgacatagaggctgtcaccattgttgggagttttcatgagacagctgatcac
gtcaatcaaaaagaaatacactggggattgcttgaggactcgctggaagatcgcctggag
aagacgggaggtctactgtctgattctgagaagggacaaggagaaagtaaagctggggat
atggatgatagtaagaaaagatccgccgaaattggaaagcaaggctcttccataaagaag
ttaaagaaggacaaagcaggaactgcaacaacaaaagttgcacgtcaggagaccagcacg
gtgttgtcgtcgatgccacgtgtgaaaccggaacttgccatgccagtaatgtctacggat
gtagaggaatcgatccttgaagacctgagaaaccgtgtgcagttgagtagcgtcgcaatg
ccatctgtcagcttttatacatttgttaatactcataacgggttaaacagttcatctata
tctcatgatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggac
atggcgaagataggacaagctggcagttgtgggttgcaggatgaaaataatcaaaccgtt
ggactaaatggcagaagaaattatacattattagtgggacactcggggccagtttactcg
gccactttcagtcctccaggagattatgttttatcttcttcagcagatacaacaataagg
ctgtggagcacaaaattaaatgccaatcttgtgtgttacaagggtcataatcacactgta
tgggatgcccagtttagtccttttgggcattactttgcaagctgttctcatgatcgtact
gcgcggatttggtcaatggatagaatgcaacctctgcggatgatggcagggcatctctct
gatgttgattgtgtacagtggcatcctaattgtaactacattgcaaccggttcgagtgat
aagacggtgagactctgggatgtacaaacaggggaatgtgtcaggatattcattggacac
aggagtatggttttatcattggcgatgtcaccagatgggagatatatggcctctggtgat
gaagatggaaccataatgatgtgggacctctcaacagctcgctgcatcacacctctcatg
ggacataactcatgtgtctggactctctcttacagcggcgagggctctcttctggcttct
ggatctgcggactgcacagtgaaactgtgggacgtctcctcaagtaccaaattgacaaag
gccgaagaaaaaaatgggaactcaaacagactgcgatcactcagaactttccccaccaag
tccacaccagttcacgctctccgattttctcggagaaacctgctgtttgctgcaggagcg
atctctaaaccctcaagctga
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