KEGG   Brassica napus (rape): 106404002
Entry
106404002         CDS       T04128                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
bna  Brassica napus (rape)
Pathway
bna03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106404002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bna03021]
    106404002
   03036 Chromosome and associated proteins [BR:bna03036]
    106404002
Transcription machinery [BR:bna03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     106404002
   Coactivators
    SAGA/TFTC/STAGA complex
     106404002
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     106404002
    STAGA complex
     106404002
    TFTC complex
     106404002
    SAGA complex
     106404002
    SLIK complex
     106404002
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 TFIID_NTD2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Tricorn_2nd eIF2A RAB3GAP2_N LisH Cytochrom_D1
Other DBs
NCBI-GeneID: 106404002
NCBI-ProteinID: XP_013700223
UniProt: A0ABQ8EFC8
LinkDB
Position
A2:complement(27823162..27827923)
AA seq 666 aa
MDPEQVDEFVMGYLKKKGFNSAAKHLQESLHNNNGSTFSSIDYHNDPELNKLIRSFSQSE
NDPSRYREGYSKLRSWGYNSLDLYKHELVRVMYPVFIHCYMDLVGKGHTQEARSFFNSFR
KDHEMVHLRDLQKLGGVLAPSHLQEMEFARSLRQSKINIKICQYSYDLLLQYLHRTESTL
MLGIINEHINFQVYSGQPNSASDDIEAVTIVGSFHETADHVNQKEIHWGLLEDSLEDRLE
KTGGLLSDSEKGQGESKAGDMDDSKKRSAEIGKQGSSIKKLKKDKAGTATTKVARQETST
VLSSMPRVKPELAMPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNSSSI
SHDGSLVAGGFSDSSIKVWDMAKIGQAGSCGLQDENNQTVGLNGRRNYTLLVGHSGPVYS
ATFSPPGDYVLSSSADTTIRLWSTKLNANLVCYKGHNHTVWDAQFSPFGHYFASCSHDRT
ARIWSMDRMQPLRMMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGH
RSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWTLSYSGEGSLLAS
GSADCTVKLWDVSSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAAGA
ISKPSS
NT seq 2001 nt   +upstreamnt  +downstreamnt
atggatccagagcaagtagacgagttcgtcatgggctacttgaagaagaaaggcttcaac
agcgctgctaaacatctccaagaatctcttcacaataacaatggcagcaccttcagctct
atcgattatcacaacgaccctgagctcaacaagctcatccgctccttttcccaatcagag
aatgatccatctcggtaccgggaaggttacagcaagctaaggtcatggggttataactca
cttgatctttataagcatgagttggttcgagtgatgtatcctgtgtttattcattgttac
atggatctagtggggaaagggcacactcaagaagcgagatccttctttaacagcttccgc
aaagatcatgaaatggtacatctacgggatcttcagaagctgggaggcgttcttgctcca
tctcatctacaggagatggaatttgctcgttctcttagacaaagcaagatcaacatcaaa
atttgtcagtattcgtatgatttattgcttcagtacctacatagaacagagtctactcta
atgcttggtattatcaacgagcacatcaatttccaagtctactcaggacagcctaactcc
gcatctgatgacatagaggctgtcaccattgttgggagttttcatgagacagctgatcac
gtcaatcaaaaagaaatacactggggattgcttgaggactcgctggaagatcgcctggag
aagacgggaggtctactgtctgattctgagaagggacaaggagaaagtaaagctggggat
atggatgatagtaagaaaagatccgccgaaattggaaagcaaggctcttccataaagaag
ttaaagaaggacaaagcaggaactgcaacaacaaaagttgcacgtcaggagaccagcacg
gtgttgtcgtcgatgccacgtgtgaaaccggaacttgccatgccagtaatgtctacggat
gtagaggaatcgatccttgaagacctgagaaaccgtgtgcagttgagtagcgtcgcaatg
ccatctgtcagcttttatacatttgttaatactcataacgggttaaacagttcatctata
tctcatgatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggac
atggcgaagataggacaagctggcagttgtgggttgcaggatgaaaataatcaaaccgtt
ggactaaatggcagaagaaattatacattattagtgggacactcggggccagtttactcg
gccactttcagtcctccaggagattatgttttatcttcttcagcagatacaacaataagg
ctgtggagcacaaaattaaatgccaatcttgtgtgttacaagggtcataatcacactgta
tgggatgcccagtttagtccttttgggcattactttgcaagctgttctcatgatcgtact
gcgcggatttggtcaatggatagaatgcaacctctgcggatgatggcagggcatctctct
gatgttgattgtgtacagtggcatcctaattgtaactacattgcaaccggttcgagtgat
aagacggtgagactctgggatgtacaaacaggggaatgtgtcaggatattcattggacac
aggagtatggttttatcattggcgatgtcaccagatgggagatatatggcctctggtgat
gaagatggaaccataatgatgtgggacctctcaacagctcgctgcatcacacctctcatg
ggacataactcatgtgtctggactctctcttacagcggcgagggctctcttctggcttct
ggatctgcggactgcacagtgaaactgtgggacgtctcctcaagtaccaaattgacaaag
gccgaagaaaaaaatgggaactcaaacagactgcgatcactcagaactttccccaccaag
tccacaccagttcacgctctccgattttctcggagaaacctgctgtttgctgcaggagcg
atctctaaaccctcaagctga

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