Brassica napus (rape): 106405745
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Entry
106405745 CDS
T04128
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106405745
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106405745
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
End_N_terminal
NosD
Motif
Other DBs
NCBI-GeneID:
106405745
NCBI-ProteinID:
XP_013701735
UniProt:
A0A816TUY5
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Position
A5:23314058..23317054
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AA seq
452 aa
AA seq
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MQTKTWFLNFSVFILKFFAYSKALDVTQHGAVGDGVTDDSQAFLKAWEAVCSGTGDGQLI
VPAGMSFMLQPLKFQGSCKSTPIAVQILGTLVASSRGDWKGDKNQWILFSDIEGLVVDGN
GKINGQGSSWWQHKGSSRPTGLKFKNCNNLRLRGLTHVDSAMAHIHINGCNDVTISNLRI
NAPESSPNTDGIDIAASSNVVIQDCVIATGDDCIAINSGTANIRISGIDCGPGHGISIGS
LGKDEGVASVEDICVQNCNFRGTMNGARIKTWPGGSGYARRITFNGITLDNVENPIIIDQ
HYKHGDSDKSTDDKSSAVEVSKVVYSNFVGTSRSEYGVNFRCSTRAPCTEIFLKDVKIET
ASSGMGQVAQGQCLNVRGGVTTLAVPGLECLALSTDWGTLPEQACMLPQQSGQPDTRPSQ
DPLWVIWVYGSGGKHLGVYSVVLTSLINLFWF
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgaagacttggttcttaaacttttcagtgttcattctcaagttcttcgcatat
tcgaaagctttggatgttactcaacatggagctgttggagatggagttacagacgattct
caggcgttcttgaaagcctgggaagctgtttgtagcgggaccggagatgggcagcttatc
gttccggcaggaatgtcatttatgttacagcccttgaagtttcaaggttcttgcaaatcg
acccctattgctgttcagatcttgggcactctcgttgcatcgagtagaggggattggaaa
ggagacaaaaaccaatggattctcttctcagacatagaagggcttgtggttgatggtaac
ggcaaaataaacggccagggttcgagctggtggcaacacaaaggcagttctagaccaacc
ggattgaagttcaagaactgcaacaatcttagacttcgtggcttaactcacgtagatagt
gcgatggcacacattcacataaacggttgcaacgatgtaaccatctcaaatctccggata
aatgcaccagaatcaagtcctaacaccgatggcatcgatatagccgcttcatccaatgtt
gtcatccaagactgcgtaatcgccactggtgacgattgcattgctataaactcggggacg
gctaacatcagaatctccggtatagattgcggaccaggccatggaataagcataggaagc
ttaggaaaagatgaaggggtagcttcagtggaggatatatgtgtccaaaactgtaacttt
agaggaactatgaatggagctaggatcaaaacctggccgggaggatctggatacgcaaga
aggattactttcaatggaattactctagataatgtcgagaatccaatcattatcgatcag
cattacaaacatggagattctgataaatccactgatgataagtcctcggcggtggaagtg
agcaaagttgtgtatagtaacttcgtggggacgtccagatcagagtacggtgttaacttt
aggtgcagcacgagagcaccatgcacagagatttttctgaaagatgtgaaaatagaaacg
gcatcgtcaggaatgggacaagtagcgcaaggacagtgtttaaacgtgagaggcggtgtg
acaacacttgcggtaccaggtttggagtgtttagcactttccacagattgggggacactg
ccggaacaagcttgtatgttgccgcagcaatcagggcagccagatacacgaccgtcgcaa
gatccgttatgggtaatatgggtttatggaagcggaggaaaacatttaggagtatatagt
gtcgtattaacttcattaattaatctcttttggttttaa
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