Brassica napus (rape): 106405800
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Entry
106405800 CDS
T04128
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03008
Ribosome biogenesis in eukaryotes
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106405800
09123 Folding, sorting and degradation
03018 RNA degradation
106405800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106405800
03019 Messenger RNA biogenesis [BR:
bna03019
]
106405800
03009 Ribosome biogenesis [BR:
bna03009
]
106405800
03016 Transfer RNA biogenesis [BR:
bna03016
]
106405800
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106405800
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
106405800
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
RNases
106405800
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
106405800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
PRC2_EED_ins
zf-CCHC_5
SPATA1_C
Motif
Other DBs
NCBI-GeneID:
106405800
NCBI-ProteinID:
XP_013701802
UniProt:
A0A816QZH0
LinkDB
All DBs
Position
C6:45720556..45726277
Genome browser
AA seq
1017 aa
AA seq
DB search
MGVPAFYRWLAEKYPLIVSDVVEEEAVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH
PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
SAKDASDAAAEEEKLREEFEREGRRLPPKIDSQVFDSNVITPGTEFMGVLSIALQYYVHM
RLNYDAGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLG
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHMASDCEGKAKKRAGEFDEKGDGFVKKPY
QFLHIWILREYLEFEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAIN
LLMAVYKKEFRSLDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRARLHQRQAERIKGD
KARKKRMDDEAPTVQPESLVPVERFSGSRLASAPAPSPFQSNGRGRSAPPPSKVRRLSSG
SSIGAAIVDVENSLEPDENENKEELKTKLKEVIREKSDAFNSDTHEEDKVKLGEPGWRER
YYEEKFSVTTIEEMERLRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKD
LEELDIKFELGTPFKPFNQLLGVFPAASAHALPERYRTLMTDPNSPIIDFYPTDFEVDMN
GKRYSWQGIAKLPFIDEKRLLEAVSEVEFTLTDEEKRRNSMMCDMLFIATSHRLAELIFS
LDNHCRQLSERERLDYKARIRPELSDGMNGYLTPCSGETHPPVFRSPVEGKEDILDNQVI
CCIYRLPDAHEHITRPPPGVIFPKKIVNIGDLKPPPALWHEDNGRRPMHNHNNNYYNNNN
NNSNHQGRHVGDAAHRLVTNSLDRRTDRDRYQRGDAHSQHHHHHHPGYGYNQPPQPYVPP
VPYQHGGGYMAPPPGVQGYAQQQGAYQSRGGYQPRGTSGRFPSDPYPVQSRGGHHRDNRG
GGYSGGYNQHHHQQYEQHGHGEGGSEHYNPREYGGQQHHRQHQQGGDRRGSHHRGRY
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcgttttaccggtggctagcggagaagtatccgctgatagtgtctgac
gtcgtcgaggaagaggctgtcgaaatcgagggcatcaagatcccggtggatacaagtaaa
cctaaccctaacaatctcgaatacgataatctctaccttgacatgaacggtatcatccat
ccttgcttccaccccgaagacaggccctcgccgacaacctttgaggaggtgtttcagtgt
atgtttgactatatcgataggcttttcgtgatggtacggccgaggaagctactctatatg
gctattgatggtgtggctccaagagctaaaatgaaccaacaacgatctagacggtttaga
tcggctaaagatgcttccgatgctgctgctgaagaagaaaagctgagagaggagtttgag
agggagggtagaagactccctcctaaaatcgactctcaagtgtttgattccaacgttatc
acacctgggacagagttcatgggtgttctgtctatcgccctgcagtattatgtgcacatg
agactcaactatgatgccggttggaaaaatatcaaggttatcctctcagacgcaaatgtt
ccaggtgaaggggagcataagatcatgtcatacattcgtcttcaaaggaacctccctggt
tttgacccaaacactcgccattgcttgtacggattggacgctgacctgattatgttgggc
ttggccacccatgaagttcatttctcaattcttagagaggtagtcttcactcctggccag
caggacaaatgcttcttgtgtggtcagatgggccacatggcttcagactgtgaagggaaa
gcgaagaagagggcaggagagttcgatgagaagggcgatggttttgtcaaaaagccttat
cagtttcttcatatctggattctaagagaataccttgagtttgaaatgaggattccaaac
ccaccgttcgagattgatctggagcgcattgttgatgatttcatcttcatttgtttcttt
gttggcaacgacttcttgcctcatatgccaaccttggagattcgagagggagctatcaac
ttgctaatggctgtatacaagaaggagttcaggtcactggacggttatctaactgatggg
tgcaagccaaacttgaagagagtggaacagtttattcaagctgtaggatcattcgaagat
aagatatttcagaaaagagccaggttacatcagaggcaagcggagagaataaagggagat
aaagctcggaaaaagagaatggatgacgaagctccgacggttcaaccggagtctcttgtt
ccggttgagagatttagcggctctcgacttgcttctgctcctgcgccttcaccgtttcag
tctaatggcagaggaaggtctgctcctcctccttcaaaagttagacgcttatcttcagga
tccagtattggtgctgccattgttgatgtggagaacagtcttgaacctgacgaaaatgag
aacaaagaagagttgaagacaaagctcaaggaggtgatccgtgagaaatctgatgctttc
aactcagatactcatgaagaggataaggtgaagctaggggaacctggatggagagagaga
tattatgaagagaagttctcagttacaaccattgaagagatggagagactacgaaaggat
gttgtattgaagtacacagaaggcctttgttgggtcatgcattactacatggaaggtgtt
tgctcttggcagtggttttatccttaccattacgcaccatttgcttctgatctgaaggat
ctggaagagctggatatcaagtttgagttaggaactccgtttaagcctttcaatcaactt
cttggggtgttcccagctgcaagtgcccatgctcttccagagcgttataggaccttgatg
actgatcccaactcacccatcattgatttttacccaactgattttgaagttgatatgaat
ggaaagcgttattcctggcagggtattgctaagctgcctttcattgatgaaaaacgcctt
ctggaagctgtttccgaagtggaattcactttaacggatgaagagaagcgtagaaacagc
atgatgtgtgacatgctattcatcgcaacgtctcatcgccttgctgaactcatcttttcc
cttgacaaccattgtcggcaactgagtgaacgggagagactagactataaggctaggatc
agacctgagctcagtgatggtatgaacggctacttgactccctgttcaggggagactcac
cctcctgtgtttaggtccccagtggagggtaaggaggacatcttggacaaccaagtcatt
tgttgcatttacagacttccggatgcacatgaacacataaccagacctcctccaggtgtc
atcttccccaagaagattgtgaacataggtgacttgaaacccccacctgctctgtggcat
gaggacaatggaaggagaccgatgcataaccacaataataattattataacaacaataat
aataatagtaatcatcaagggaggcatgtgggagacgcagcgcatcgtctagtcaccaac
agcttagacaggagaacagaccgggacaggtatcaaagaggagatgcacattctcagcat
catcatcatcatcatcctggttacggctacaatcaaccaccgcagccgtatgttccaccg
gttccttaccagcatggtgggggctatatggctcctccacctggcgtgcaaggctatgct
cagcaacaaggtgcttatcagagtagaggtgggtaccagcctcgtggaaccagtgggaga
ttcccgtcggatccttacccggttcagtcacgaggtggtcatcaccgtgacaacagagga
ggaggttattctggtggttacaaccaacaccatcatcaacaatatgagcagcatgggcac
ggtgaaggtgggtctgagcattataacccaagagagtatggtggtcagcagcatcaccgt
cagcatcagcaaggtggcgaccgcagagggagtcatcatcgtggtcgttattaa
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