Brassica napus (rape): 106405802
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Entry
106405802 CDS
T04128
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106405802
03015 mRNA surveillance pathway
106405802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106405802
03041 Spliceosome [BR:
bna03041
]
106405802
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106405802
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
106405802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
106405802
NCBI-ProteinID:
XP_013701805
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All DBs
Position
C4:complement(16766933..16770669)
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AA seq
836 aa
AA seq
DB search
MSGGFFRGTTADQDTRFSNKQAKLMKSQKFASELETLVDVSKVKMDVMKPWIATRVTEIL
GFEDEVLINFIYGLLDKKVVNGKEIQIAITGFMEKNTVKFMKELWTLLLSAQSNSSGIPQ
QFLDARVAETKRLQDEARKKADENNQLVNEIGKRKCYEDDIQGKIDSGVEHKVSNAMDAK
PSRDRPEDERKADEKVGVYERRRGSRSRSISRTNSGSRSYSGGRKSRSLSRSSDASISPR
KRRPSYSRRRSRSRSLSRSLSPRRRSIRSPHGSRSRSPIRRRRSPSPQRRRRVSTPERRR
QSSPPSRRRRSPSPPVRRRRSPSPPAKRRRSPSPPARRRRSPSPLSRKRRSPSPPVRRRR
SPSPPARRQRSPLPFRRRRSPSPVARRRRSPSPLYRRNRSRSRSPLAKRERSDSPGRSPS
LVGSRRAPAGQRLPSPPARPRLPSPPAGQRLPSPPPRRAGSPSPMRLGGPQSANHPKSPS
PSSLSPPGRKNGLPSPPVRRRRSLTPAKERGSLSPAGRPVGKSPSHDKQGESMSPVRGRG
RSPPSRHQKARSPVRRRSPKPVNRRSRRSPSGSRSPDDSRRRRSPSWSRSSSRSPSPPVR
RRSPSPSGRKHPRDRRSLGHPSEVRDREDRDQKSKLSRKQLPEMVQEVGRVEHAKEQERK
SEKLPERRSSHRMHHGSQMSPVSDKDFGGVENVEGKRQPPSQVEKEDNSDLDAKLNSDSK
DKKRRKTKRSERDEAASDSNGSSDSDLEDRKEAKRRRNEEKKTKKEEKKRRREERRRKRE
ERRDEKLKLKNRGYSDSSEGEAGKSKNGEESDPKRLEIELRNKALESLKAKKGISH
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggattcttccggggtactaccgcggaccaggacactcgcttctccaacaag
caagcgaagctgatgaagagccagaaattcgcctcggagctggagactctggttgatgtg
agcaaggtgaagatggatgttatgaagccttggattgcgactagagtcactgagattctt
ggtttcgaggatgaagtcctcatcaactttatttacggtcttcttgataagaaggtcgtc
aacggtaaggagattcagatagctatcactggcttcatggagaagaacactgtcaagttc
atgaaagagctctggacgcttctcctcagcgcccagagtaattctagtggtattccgcag
cagtttcttgatgctagagtcgctgaaaccaagaggttacaggacgaagcaagaaaaaaa
gcagatgagaacaatcagttagtaaatgaaattgggaagaggaagtgctacgaggatgac
atacaggggaaaattgacagcggcgttgaacacaaggtgtcaaatgccatggacgcaaaa
ccttcaagagatcgtccagaggatgagagaaaggctgatgagaaggttggagtctacgaa
aggagaagaggttcacgttcgaggtcgatcagcagaacaaattcaggatcaagaagttat
tctggtggacggaaatcaaggagcttgtcccgatcatcagatgcctccatctcacctaga
aagcggagaccatcttattcaaggcgtcgatccaggtcacgttctttgagtaggtctctg
tctcctcggcggcgtagtatacgttctcctcatggaagcaggtcgcggtcacctattaga
cgtcgcaggtcaccatcaccacaaaggcgccgccgtgtatctacacctgagagacgccgc
caatcatcacccccttcaaggcgtcgcaggtcaccatccccacctgttaggagacgcagg
tcaccatcccctcctgctaagagacgcaggtcaccatcccctcctgctaggagacgcaga
tcaccatcccctctttctaggaaacgcagatcaccatcccctcctgttaggagacgcagg
tcaccatcaccgcctgctaggcgtcagcggtccccattaccatttaggcggcgtaggtct
ccttcacctgtagctagacggcgcaggtctccatctccactctacaggcgtaacagatca
cggtcacgatcaccactggctaagcgggaaaggtctgattcaccagggagatctccgtca
ctagtgggtagccgcagggcacccgctggtcaaaggttgccctctccacccgctaggcca
agattgccttcaccacccgctgggcaaaggttgccttcaccacctcctaggcgtgcagga
tcaccatcaccaatgaggctaggaggacctcagtcagccaatcatcctaaatcaccatca
ccaagttcactgtcccctcctggtaggaaaaatgggttaccatctccacctgttagaagg
cgcaggtcactgacacctgccaaagagcgaggctccctgtctccagctggacgtcctgtg
ggaaaatccccttcacatgacaagcagggtgaatctatgtcacctgtcagaggtcgaggt
agatctcctccctctcgacatcaaaaggcgcgctctcctgttcgccgtagatcaccaaaa
cctgtcaacaggcgaagtcgaagatctccatctggttcacgatcacctgatgacagccga
aggagacggtctccatcttggagcagatcttcgtctaggtctccctcacctcctgttcgc
cgtagatctccttcacctagtggaagaaaacacccgagggacagaagatctctgggacat
ccatctgaagtgcgagatagagaggatagggatcaaaagtccaagctgtctagaaaacaa
ttaccagagatggtacaagaagttggacgtgttgaacatgcgaaggagcaagagagaaag
agtgaaaagttgccagagagacgttctagtcacagaatgcaccacggttcacagatgtcc
ccagtttcagataaggacttcggtggagtagaaaatgtggaaggaaagagacagcctcct
tcgcaagttgagaaagaggataacagcgacctggatgcaaaacttaattctgattctaag
gataaaaagagaagaaagacaaaaaggtctgagagggacgaagcagcctcagatagtaac
ggcagctctgactctgacctagaggataggaaggaagctaaaaggagaaggaatgaggaa
aagaaaacgaaaaaggaggagaagaaacgcaggcgagaggagagacgtcgtaaaagagaa
gaacgtcgggatgagaagctgaaacttaagaatcgaggatattctgattcttcagaaggc
gaagctgggaagagtaaaaatggggaggagtcggatccaaagaggcttgagattgagtta
cgaaacaaagcactcgagtcactgaaagcaaagaagggcatcagccactaa
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