Brassica napus (rape): 106405808
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Entry
106405808 CDS
T04128
Name
(RefSeq) protein SPA1-RELATED 3 isoform X1
KO
K26557
protein SPA1-related 3/4
Organism
bna
Brassica napus (rape)
Pathway
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106405808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106405808
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
106405808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Pkinase
Beta-prop_CAF1B_HIR1
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_Vps41
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_DCAF12
WD40_like
PK_Tyr_Ser-Thr
Beta-prop_RIG_1st
WDR54
Motif
Other DBs
NCBI-GeneID:
106405808
NCBI-ProteinID:
XP_013701810
LinkDB
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Position
A5:23574170..23577765
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AA seq
803 aa
AA seq
DB search
MEGSSNSNSRGFFNTSGVSDRNTERVTARSKPSLSHVDEYVRSVFGSSTRKSFEEDSLGT
GDPFVRSLEWGDVSLRQWLDKPERCVDVFECLHVFRQIVEIVNVAHSQGIVVHNVRPSCF
VMSSFNHVSFIESASCSDSGSADSLEDDPVSHKKREDAGSYNKILERQVEKLEEEKKQPF
PMKHVLAMETSWYTSPEEEFGSPSTCASDVYRLGVLLFELFCPVPSREEKSRTMSSLRHR
VLPPQILLKCPKEASFCLWLLHPEPSCRPSMSDLLQSEFMTEPRDNLEEREAAIELRDKI
EEQESLLEFLLMIQQRKQESAYRLRDTVSLLSSDIEQVAKRQLVLKQKGSSFSDLSFPEE
PSTLLASRKRFRQVIPPEETNDEESLFLESSRLMRNFKMLETVYFLTRRRQLKASAALGK
SLTRHSPLSSENGRGSEKSSVSNSAAPKDLSQNDSRQGGWIDPFLEGLCKYLSFSKLRVK
ADLKQGDLLNSSNLVCSLAFDRDGEFFATAGVNKKIKIFECDSIVNNNRDIHYPVVELAS
RSKLSSACWNSYIKSQIASSNFEGVVQIWDVSRSQLVTEMKEHKKRVWSIDISSADPTLL
ASGSDDGTVKLWSINQGASIGTIKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPK
IPLSTMIGHSKTVSYVKFVDSSTLVSSSTDNTLKLWDLSMSASGVNETPLHSFAGHTNLK
NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFSNTDSTSGLEVDDASQFISSICW
RGQSSTLVAANSNGNIKILEMVA
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctcttcaaactccaactctagagggttcttcaacacctctggcgtttcagac
aggaacactgagagagtcactgctcgctcgaagccttctttatctcatgttgatgagtat
gtcagaagcgtgtttggtagcagcacacgcaaatccttcgaagaagattctttagggact
ggtgacccttttgttagatccttggaatggggtgatgtcagcttgagacagtggctggac
aagcctgaacggtgcgtagacgttttcgagtgcttgcacgttttcagacagatcgtggag
attgtgaatgtggctcactctcaaggcattgttgttcataacgttagaccgtcttgcttc
gtcatgtcttcgtttaaccatgtttcattcattgagtccgcttcttgctctgactcgggg
tctgctgattccttggaggacgatccagttagccataagaaaagagaggacgctggatcc
tataacaagatcttggagagacaagtagagaagctagaggaagagaagaagcagccgttt
ccgatgaaacatgtgttagcaatggagacaagttggtacacaagccctgaagaggagttt
ggttctccgagtacttgtgcttctgatgtctaccgtcttggtgttcttcttttcgagctg
ttctgtcctgtgccttcaagagaagagaagtcaagaactatgtctagtttaagacatcgt
gtgcttccgcctcagatattgctcaaatgtcctaaagaagcttctttctgcttgtggcta
ctgcatccagagccaagctgtcgaccatcaatgagtgacttgctgcaaagcgagtttatg
accgaaccaagagataatctggaagaacgtgaagcagcaatagagcttagggacaaaatc
gaggaacaagagtcgttactcgagttcttgttgatgattcaacagagaaagcaggagtct
gcttatagattgagggatacagtttcacttctttcttcagacatagagcaagttgcgaag
agacagttagttttgaagcaaaagggaagctcattctctgatctcagcttccctgaagag
ccttcaacattattggcttcaagaaaacggtttagacaagtgattcccccagaggaaacc
aatgatgaggagagcctgtttcttgaaagctccaggttgatgagaaacttcaagatgcta
gaaaccgtctactttctaacaaggcgcaggcaactgaaagcttctgctgctttggggaag
tcgttaactagacattcaccgttaagcagtgaaaacggaagaggttcggagaaaagctca
gtaagcaactctgcagcacccaaagatctttcccaaaatgattcaagacaaggagggtgg
atagaccctttccttgagggtttgtgcaaatacttatcattcagtaagctcagagtgaaa
gcagatttgaagcaaggagacttgttgaactcttctaaccttgtttgctcccttgcgttt
gaccgtgatggagagtttttcgccactgctggtgtcaacaagaagatcaagatcttcgag
tgtgactcaattgttaacaataaccgggacattcactatccggttgtggagttggctagc
cggtcaaagctgagcagtgcgtgttggaacagttacataaagagtcagattgcatcaagt
aactttgaaggcgtggttcagatatgggatgtttcaagaagccagttggttacagagatg
aaggagcacaagaagagagtgtggtccatcgatatttcatcagcagacccgactttgcta
gctagtggaagcgatgatggaaccgttaagctatggagtatcaatcagggagctagcatt
ggaaccatcaagacaaaggctaatgtatgttgtgtccagtttccatcagactctggccgg
tctttagcattcggctctgcagatcacaaagtgtattactatgatcttaggaatcccaag
attcctctgagcacaatgattgggcatagcaagacagtgagttatgtcaagtttgtggat
tcgtctactcttgtgtcttcttctactgataacacgctgaagctttgggacttatccatg
tctgcctctggtgttaacgaaacgcctcttcattcatttgctggacacactaatctaaag
aactttgttggcttatcggtctctgatgggtatatagctacaggctcagagactaacgag
gttttcgtgtaccacaaggcattcccaatgccggttatgtcgtacatgttcagcaacact
gactctacgtctggtctagaagttgatgatgcctcacagttcatatcttccatctgctgg
cgaggacagtcgtctaccttagtcgctgctaactccaatggcaacatcaagattctggaa
atggtggcatga
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