KEGG   Brassica napus (rape): 106406033
Entry
106406033         CDS       T04128                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
bna  Brassica napus (rape)
Pathway
bna03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106406033
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106406033
   03036 Chromosome and associated proteins [BR:bna03036]
    106406033
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     106406033
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     106406033
    COMPASS/SET1 complex (yeast)
     106406033
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_SPT8 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_Vps41 WD40_like Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 106406033
NCBI-ProteinID: XP_048630033
LinkDB
AA seq 335 aa
MIGGGQAEREERVALEISEELVRSMEPGAVFRDYNCRISSIDFNKNSSYMVTASDDDSIR
LYDVATATCLKTINSKKYGVDLVCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKG
HHDRVVSLSLCSAGESFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLVFAIA
FGGFIRLFDSRMYHKGPFEIFSVGGDLSEANVVKFSNDGRRMLLTTMGGHIHVLDSFRGT
LLSTYSVKPVAEESTLDATFSPEGMHVVSGSGDGSTHAWSVRSGKQVQSWMGGHGSEAPP
VIKWAPGSPMFVTGSSELAFVIPDLSKLSAYANRK
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgattggaggggggcaagcggagagagaggaacgagtagcgttggaaataagtgaagaa
ttagtaaggagcatggaacctggcgctgttttcagagactataattgcaggatcagctcg
attgactttaacaaaaattcgagttatatggtgacggcaagcgacgatgactccattcgt
ctctacgatgttgctaccgctacatgcctgaagacgattaacagcaaaaagtatggggtt
gatcttgtttgcttcacttcacatcctaccactgtcatctactcttcccgtaacggctgg
gacgactctctgcgccttctctctttgcacgataacaagtatttgcgctacttcaaagga
catcacgacagagttgtctcgcttagcttgtgttctgctggtgaatccttcatctccggt
tctcttgatcgaactgttttgctttgggatcaaagggtcgagaaatgccagggtctctta
cgtgtccaaggaaggcctgctgcagcttatgatgatcaaggtttagtctttgctattgcc
tttggtggcttcataagattgtttgattcccgtatgtaccataaggggccttttgaaata
ttttccgttggtggtgatctttctgaggcaaacgttgtcaaatttagtaatgatggaagg
cgcatgctgcttaccaccatgggcggccatattcatgtgcttgattcttttcgtggaaca
ctcctatccacatatagtgtgaaaccagtggctgaagaatctactttggatgcaaccttc
agtcctgaagggatgcatgttgtttcaggttcaggagatggtagtacccatgcatggagt
gtgaggagcggaaaacaggttcagagttggatgggtggtcatgggagtgaagctcctcca
gtaataaaatgggctccaggaagtcccatgtttgtcacaggctcatccgagcttgctttt
gttatccctgacttatctaaattgtcagcttatgccaatcggaaatag

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