Brassica napus (rape): 106406377
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Entry
106406377 CDS
T04128
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106406377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106406377
03019 Messenger RNA biogenesis [BR:
bna03019
]
106406377
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106406377
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106406377
U7-dependent histone pre-mRNA processing factors
106406377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
TPR_Edg1
Motif
Other DBs
NCBI-GeneID:
106406377
NCBI-ProteinID:
XP_013702475
UniProt:
A0ABQ8EMR5
A0A078JNW0
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All DBs
Position
A1:complement(20277345..20280292)
Genome browser
AA seq
694 aa
AA seq
DB search
MASSSTSLKRREQQPMSREGDQLIVTPLGAGNEVGRSCVYMSFRGKTILFDCGINPAYSG
MAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD
YVKVSKVSVEDMLFDEHDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI
AGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHST
VAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSM
NDRIRNQFANSNPFVFKHISALNSIDDFRDVGPSVVMASPGGLQSGFSRQLFDIWCSDKR
NACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL
MPPNIILVHGEANEMMRLKQKLFTEFPDGNTRIMNPKNCESVEMYFNSEKMAKTIGRLAE
KTPDVGDSVSGILVKKGFTYQIMAPDDLHVFSQLSTATVTQRITIPFSGAFGVITHRLGK
IFESVESSTDEETGLPALKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALVLNISR
EVPKIVAEEEVAVKSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVISVDGNVAHLDKE
SGDVEGEHEGLKERVRVAFHRIQSAVKPIPLSAE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtcttcgacatctctgaaaaggagagagcagcagccaatgtcgcgagaagga
gatcagcttatcgtcactcctttaggcgccggtaacgaagtcggtcgttcctgcgtttac
atgtccttccgcggcaaaaccattctgttcgattgtgggatcaatcctgcctactcggga
atggctgccttgccttacttcgatgagattgatccttccaccattgatgtcctcttgatt
actcactttcatttggatcatgcagcatcccttccttattttctagagaagactacattc
aaaggaagagttttcatgacgcatgctaccaaggctatctacaagttgctgcttacagat
tatgttaaagtcagcaaggtttctgtggaagacatgttgttcgatgaacatgacatcaac
aaatccatggataaaattgaggttattgatttccatcaaacggttgaagtgaacggcatt
aagttctggtgctacacggcaggccatgttttgggtgcagccatgttcatggtggacatt
gctggtgtccggatcctctacacaggcgactattcccgtgaggaagaccgacatctaaga
gcagctgagcttcctcaattctcccctgacatatgcatcattgaatccacttccggcgtc
cagcttcatcagtctcgtcacatcagggagaaacgcttcaccgatgttatccattcgaca
gttgcccagggcggtcgtgtcctgatcccagcttttgccctcggccgtgcgcaggaactc
ctcttgattctagatgagtactgggccaaccaccctgatctacacaacatccctatctac
tatgcgtcaccgctcgccaaaaagtgtatggctgtttaccagacctacattttatccatg
aacgacaggatccgcaaccagtttgcgaattctaatccctttgtgttcaagcacatatct
gcgctgaacagcatcgatgatttcagagatgttggtccgtctgtggttatggctagtcct
ggtggtcttcaaagcggtttctcgaggcagctctttgacatctggtgttcggataagaga
aacgcttgtatcatacctggttatatggtggaaggtacactggcgaaaacgataatcaat
gagcccaaggaggtgactcttatgaacggtcttactgctcctctcaacatgcaggtgcac
tacatctccttctctgctcacgcagactatgcgcagacgagcactttcttgaaagagctc
atgccaccaaacatcatccttgtccacggtgaagctaacgagatgatgaggctcaaacag
aaactctttactgagtttcctgatggaaacacgaggatcatgaatccgaagaactgtgag
tcggttgaaatgtacttcaactctgagaaaatggcgaaaaccattgggagattggctgag
aagacacctgatgttggagattcagtgagtggaattctggtgaagaaaggtttcacttat
cagataatggcacctgatgatctccatgttttctcacagctatcgacagcaactgttact
cagcggataactatccctttctctggagctttcggtgtgataacacatcgcctcgggaag
attttcgagtccgttgaatcttcaacggacgaggaaactggtcttccagcgctgaaagta
cacgaaagagtaactgtgaagcaagagtcagagaagcacatctcgcttcagtggtcatct
gatccaataagtgacatggtttcagactccattgtggctctggttctcaacatcagccgg
gaagtccccaagatcgttgcggaggaagaagttgctgtgaaatccgaagaagagaatggg
aaaaaagtggaaaaagtgatatatgctcttcttgtgtcgctctttggggatgtgaaactt
ggagagaatgggaagctggtgattagtgtcgatggcaatgtcgctcatcttgataaagag
agtggagatgtagagggtgagcatgaaggtctaaaagaaagagtgagagtagcttttcat
cggattcaaagcgctgtgaaaccaatccctctctcagctgaatga
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