Brassica napus (rape): 106406465
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Entry
106406465 CDS
T04128
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106406465
03036 Chromosome and associated proteins [BR:
bna03036
]
106406465
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
106406465
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
106406465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HTH_44
HHH_3
Tex_N
SH2
Motif
Other DBs
NCBI-GeneID:
106406465
NCBI-ProteinID:
XP_013702592
UniProt:
A0A816WTR1
LinkDB
All DBs
Position
A2:complement(7767767..7775028)
Genome browser
AA seq
1607 aa
AA seq
DB search
MARNDISDEEVDDHELEDEEGEPVHGDPVENPDNDDEDEEEGDNEYDKNDGFIVSDEEEE
DDEGEEERQNSDGEKKKKKKKKRRKKDEDLDEEDYLLLQDNNPKFQKRKYKRLKKAQREF
GQGGSSDDDFDGSSGAGRSAEDKIKDDLFDDVDVDLPDDDVGDEEELAVDEDVVGSEDEM
ADFIVDEDGNGHRRKGDHKKKKYRQGSDISALRDASEIFGDVDELLLIRKKGLASSERVE
RRLEDEFEPTVLSDKYMTGKDDEIRQLDMPERMQISEESTGSPPIDELSIEEESNWIYAQ
FTSLLKDPDGLHIFGGQGFSVKKDDIAKFLELHHVQKLEIPFIAMYRKEQCRSLLDSSDI
SELYIEKKPETKWHKVFWMIQDLDRKWLLLRKRKMALHGYYTKRFEEESRRVYDETRLNL
NQYLFESVIKSLKVAETEREVDDVDSKFNLHFPAGEVGIDEGQYKRPKRKSQYSICSKAG
LWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEEKALNFVCAMFENPQAVLRGARHM
AAVEISCEPSVKKYVRGIYMENAVVSTSPTADGNGVIDSFHQFSGVKWLREKPLSKFEGS
QWLLIQKAEEEKLLQVTFKLPENFMNRLISDCNEHYLSVGVSKYAQLWNEQRKLILEDAL
HTFILPSMEKEARSLLTIRAKSRLLSEYGQALWNKVSAGPYQKKEMDISSDEESAPRVMA
CCWGPGTPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVSDQQRKKNDQDRVLKFMVDHQPH
VLALGAVNLSCTRLKDDIYEVIFQVVEEKPRDVGHGMDDLTIVYVDESLPRLYENSRISG
EQLPQQSGIVKRAVALGRYLQNPLAMAATLCGPGREILSWKLHPLENFLQVDEKYEMVEQ
VMVDITNQVGIDINLAASHEWFCSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIMHG
LGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYGLAQELAKDIYDQDVRDDS
NDDEDAIEMAIEHVRDRPGSLRKVVLEEYLASKKRENKKETYGNIMRELSCGFQDWRMPY
KDPTPDEEFYMNSGETEDTIAEGRIVQATVRRLQSGRAICVLDSGLTGMLTKEDFADDGR
DIVELSDRLNEGEILTCKIKSIQKESYRVFLICKESEMRNNRRQQNQNLDPYYREDRNSL
QTEKEKARKEKELVRKHFKSRMIVHPRFQNITADQATEYLSDKDFGESIVRPSSRGLNYL
TLTLKIYGGVYAHKEIVEGGKESKDITSLQRIGKTLTIGEDTFEDLDEVMDRYVDPLVSH
LKTMLNYRKFRKGTKSEVDELLRMEKSENPARIVYSFGISDEHPGTFILSYIRSTNPHHE
YVGLYPKGFKFRKRMFEDIDRLVAYFQRHIGDPLQETVPSIRSVAAMVPMRSPADRGSSG
GGAGGWGGSQSEGGWKGNSDRSSAPRPGRGGEYRNGGGRGDGHPSGAPRPYGGRGRGRGR
SDNNREREDGNRDWGNNNSGTGDGGWGSESGGNKSGGAGGWGSESGGGGWGNDSGGKKSS
EDGGWGGGSGSGGGGGGWGNESAGKKSGEDSGWGNESSGNKSGGGGW
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggaacgacatttccgacgaagaagtagatgatcatgagctcgaggatgaggag
ggagagccagttcatggagatcctgtcgagaaccctgacaacgatgatgaagatgaagag
gagggtgataatgaatatgataagaatgatggtttcatagtgagtgatgaagaagaagaa
gatgacgagggagaagaagagaggcaaaatagcgatggggagaagaagaaaaagaagaag
aagaaacgaaggaaaaaggacgaagatcttgatgaagaggattatctgctgctccaagat
aacaacccgaaattccaaaagagaaagtataagaggttgaagaaagctcaaagggagttt
ggccagggaggatcatctgatgatgattttgatgggagtagtggagctgggagaagtgct
gaggacaagattaaagacgatctgtttgatgatgttgatgtagatctgcctgatgatgat
gtaggcgatgaggaagaactagctgtggacgaagatgtagttgggagcgaggatgaaatg
gcagatttcatcgtagatgaagatggcaatggtcatcgtaggaagggcgaccataagaaa
aagaaatatagacagggatcagatatcagtgctctgagagacgctagcgaaatatttggc
gatgttgacgagcttttgttaattcgcaaaaagggtttggcatcaagtgaaagggtggaa
agaaggcttgaagatgagtttgaaccaactgttctctctgataagtacatgacagggaaa
gatgatgaaatccgccaacttgatatgcctgagaggatgcagatatctgaagaaagcact
ggaagccctccgatagatgaactcagcattgaggaagagagcaattggatatatgcccaa
tttacttctctactaaaagatcctgatggacttcacatttttggtggtcaaggtttctcg
gttaagaaggatgacattgcaaagtttttggagctacatcatgtgcagaaactagagata
ccatttatagctatgtacagaaaggagcaatgccggagcttgttagattcttctgatatc
agtgagctctatatagagaagaaaccggagaccaagtggcataaggtcttctggatgatt
caggacttggataggaagtggctccttcttcgaaaaaggaaaatggcgttgcatggttac
tacacaaaacgtttcgaagaagagtccaggagggtttatgatgaaactaggcttaaccta
aatcaatatctttttgaatcagtcattaagtctcttaaagtggcagaaacagaaagagaa
gttgatgatgtagattccaagttcaacttgcattttcctgccggtgaagttggtattgat
gaagggcagtacaagaggcctaagagaaaatcacaatatagcatctgcagcaaagcgggg
ctctgggaggttgcaaacaaatttgggtatagtgctgagcaattgggacttgcattgtcc
cttgaaaaactggttgatgagcttgaggatgcaaaggaaacaccagaggaaaaggcattg
aactttgtgtgtgcaatgtttgaaaatcctcaagctgttctaaggggtgcacggcatatg
gctgcagttgagataagttgcgagccatcagtcaaaaagtatgtccgtgggatttatatg
gagaatgcagtagtctcaacaagtccaacagcagatgggaatggagtaatagactctttc
catcagttttctggggttaagtggttacgagaaaagccactgagcaagtttgagggttcg
cagtggcttctcattcagaaggcagaagaggagaaacttcttcaagtaacgttcaagctg
cccgagaatttcatgaacaggctaattagtgactgcaatgaacactatctaagtgttggg
gtcagtaagtatgctcaactctggaatgagcaaagaaaattaatactggaggatgcactt
catacttttattttgccatcaatggagaaagaagcaagatccttgctaactattagagcg
aagagtaggctgctttctgagtatggacaggctttgtggaacaaggtgtctgcagggcca
tatcaaaagaaagaaatggacattagctcagatgaggaatctgcaccaagggtcatggca
tgttgttggggacctggaacgccaccaaatacgtttgtgatgctggattcatcgggagag
gtgcttgatgtcctttatgctggatctctcacactgcgatcccagaatgtcagcgaccag
caacgtaaaaagaatgaccaggatcgtgttttaaagtttatggtggaccatcaaccgcat
gttctggctttaggagctgtcaatttgtcttgtactcgtctgaaagatgatatatatgag
gtcatattccaggtggtggaggaaaagcctagagatgttggacatgggatggatgattta
accattgtttatgtagacgaatcacttcctaggctatatgaaaactctcgaatctcaggt
gaacagctacctcaacagtcagggatcgtgaaacgtgcagttgctcttggacgctatctc
cagaatcctcttgcaatggctgcgactttatgcggtccaggccgggagatattgtcttgg
aagcttcatccattggagaattttcttcaggttgacgagaagtatgagatggttgagcag
gttatggttgacataacaaaccaggttggaatcgacattaatttggcagctagccatgag
tggttttgttctcctttacagttcatttctggacttgggcctaggaaagctgcgtcattg
caaaggtcacttgttagagctggatctatatttgtccgcaaggacctgataatgcatggt
cttggtaaaaaggtgtttgtaaatgcagctggtttcttgcgcatccgaaggagtgggctg
gctgctagtagcagtcaatttatcgacttattggatgacaccagaatacatcccgagtcg
tatggtcttgcacaagaattggcaaaagatatttatgatcaagatgtaagagatgattcg
aatgatgatgaggatgcaatagagatggcaatagagcatgtgagagatcggccaggctct
ttgaggaaagttgtccttgaggagtatcttgcaagcaagaaacgagagaacaagaaggaa
acttacggtaatatcatgagagagttaagctgtggtttccaggattggcggatgccttat
aaagatccaactccagatgaagagttttatatgaactcaggagagactgaagataccata
gctgaaggcagaattgtccaggccactgttcggagattacagagtggaagagccatatgt
gtcttagattctggattaactgggatgcttacgaaggaagatttcgcagatgatgggaga
gacattgtcgagttgtcggaccgactaaatgaaggcgaaattcttacatgcaagatcaaa
tcgattcaaaaggagagctatcgggtgttccttatttgcaaagaaagtgaaatgagaaac
aacaggcgccagcaaaaccagaatcttgatccctattaccgtgaggatagaaacagtctc
cagactgaaaaagagaaagctcgaaaagaaaaggagctggtgaggaagcatttcaagtct
cggatgattgtccatccccgtttccagaacatcactgctgaccaagcaaccgagtatttg
tctgacaaagattttggagaaagcattgttcgtccaagttctcgaggactcaattacttg
acattgacgcttaagatctacggtggagtctatgctcacaaggagatagttgaaggtgga
aaagaaagcaaggacatcacaagtttacagcggattgggaagacgctgacaattggagag
gacaccttcgaggatttagatgaggtcatggatcggtatgttgatcctctagtctctcat
ctcaagacgatgcttaactataggaagttccggaaggggacaaaatcagaagttgatgag
cttctcaggatggagaagagtgaaaatcctgcaaggatagtgtactctttcgggatatca
gacgagcatccaggaacctttatactgtcttacataaggagcacaaatccacatcacgag
tatgttggtctataccccaagggattcaagttcaggaaaaggatgtttgaagacattgac
aggcttgtggcgtacttccagaggcatattggtgacccgttgcaggaaacagttccatct
atcaggtctgttgcggccatggtgccgatgagaagcccagcggaccgtggctcttctgga
ggtggtgctggtggttggggtggttctcagagtgaaggaggctggaaaggtaactcggat
cgctcatctgcaccaagaccagggagaggcggtgagtacagaaatggtggtggacgtggt
gatgggcatccaagtggagcgcctaggccgtatggtggtcgtggtcgaggcagaggacgg
agtgataacaacagagagagggaagatggaaaccgagattggggaaataacaattccgga
accggagatggaggttggggaagcgagtctggtggtaataagagtggcggggcaggcggt
tggggtagcgaatctggaggtggtggttggggaaatgattctggtggtaaaaagagcagc
gaggatggtggttggggtggcggttctggttctggtggtggcggcggtggttggggaaac
gagtctgccggtaaaaagagtggtgaagatagtggttggggaaacgagtctagtggtaat
aagagcggaggtggcgggtggtga
DBGET
integrated database retrieval system
