Brassica napus (rape): 106406547
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Entry
106406547 CDS
T04128
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Pathway
bna04120
Ubiquitin mediated proteolysis
bna04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106406547
04120 Ubiquitin mediated proteolysis
106406547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106406547
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106406547
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106406547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_5
zf-RING_11
zf_RING_Vps8
Prok-RING_4
zf-HC5HC2H
zf-RING_Vps41
DUF5320
PHD_NSD
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
106406547
NCBI-ProteinID:
XP_013702694
LinkDB
All DBs
Position
A2:complement(7642423..7645266)
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AA seq
456 aa
AA seq
DB search
MIRLRAYAGISTLATLSVIYHAFSSRGQFYPATVYLSTSKTSLVILLNMGLVLMLALWNL
VKLVFLGSLREAEVERLNEQAWRELMEILFAVTIFRQDFSVGFLSLVVTLLLIKALHWMA
QKRVEYIETTPSVTLLSHVRIVSFMVFLLILDGLFTYTSIRQYIQTPKASMSVFFTFEYM
ILATTTLSVIVKYAFYVTDLVMEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLMIFMNYG
LPLHLIRELYETFRNFKIRVTDYLRYRKIASNMNDRFPDATPEELSSNDATCIICREEMT
SAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENATSTASAAHQVSLQQQGTGTSS
SDGQSSSVAASGNLSRHEARVRAAASAASIYGRSFVYPSSENTLVWSQGYSSLPQAELES
QKRYLESQIEVLQNQLRLLKEPAATTVDMKGKSVAE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgattcggcttagggcttacgcggggatcagcaccctcgcaacactctccgtgatctac
cacgccttcagcagccgtggtcagttctacccagccaccgtctatctatccacctccaag
accagtctagtcatccttctcaacatgggcctcgtcctcatgctcgccttatggaacctc
gtcaagctcgtcttcctcggctccctcagagaagccgaggtggagcggctgaacgagcag
gcctggagagagctcatggagattctcttcgccgtcactatcttccgacaggacttctct
gtcgggttcctctctttggtcgtgactctcttgctgatcaaggctttgcactggatggct
cagaagagggtcgagtatatcgagacgactccttccgtgactttgctctcgcatgttcgc
attgtgtctttcatggtgtttctcctgatcttggatggtctctttacgtatacttcgata
cggcagtatattcagacaccgaaagcttccatgtcggtcttcttcacgtttgagtatatg
attctggcgactacaactctatctgtgattgtgaagtatgccttctatgtcactgatctg
gtcatggaaggtcaatgggaagggaagccagtatatactttctatttggagcttgttcgt
gacttgcttcacttgtccatgtacctctgcttcttccttatgatcttcatgaactatgga
cttccgttgcatctaataagggagctctacgaaacattcagaaacttcaagatccgtgtg
actgattacctccggtatcgtaaaatcgcttccaatatgaacgatcggtttcctgatgca
actcctgaagaactcagttcaaatgatgccacctgtattatatgccgtgaagaaatgacc
tcagcgaagaagttagtatgtggccatctgtttcatgtacactgtcttcggtcgtggttg
gaacgacagaacacgtgtcccacctgcagagcactggttgtaccagctgagaatgctaca
tcaacagcttctgcagcacaccaagtatccttgcagcagcagggaacgggaacttcaagt
tcagatggccagagttcttctgttgctgcaagtggtaatttgagcaggcatgaggctagg
gttcgagctgctgcttctgcagcgtccatatatgggagatcctttgtttatccatcttct
gaaaacacacttgtctggtctcaaggctattcgtcgcttcctcaagcagagctagaatct
cagaagaggtatctcgagtcccagattgaggtgttacaaaaccagctacgtcttctaaag
gagcctgctgcaactactgtagatatgaaaggaaagtcggttgcggagtga
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