KEGG   Brassica napus (rape): 106407275
Entry
106407275         CDS       T04128                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
bna  Brassica napus (rape)
Pathway
bna03030  DNA replication
bna03410  Base excision repair
bna03420  Nucleotide excision repair
bna03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106407275
   03410 Base excision repair
    106407275
   03420 Nucleotide excision repair
    106407275
   03430 Mismatch repair
    106407275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bna03032]
    106407275
   03036 Chromosome and associated proteins [BR:bna03036]
    106407275
   03400 DNA repair and recombination proteins [BR:bna03400]
    106407275
DNA replication proteins [BR:bna03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    106407275
  DNA Replication Termination Factors
   ELG1-RFC complex
    106407275
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    106407275
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     106407275
  Check point factors
   HRAD17(Rad24)-RFC complex
    106407275
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_22 DUF815 AAA_5 RsgA_GTPase RuvB_N Mg_chelatase AAA_29 AAA_23 AAA_16 ABC_tran AAA_24 ATPase_2 AAA_2 T2SSE nSTAND3 FtsK_SpoIIIE TsaE AAA_30
Other DBs
NCBI-GeneID: 106407275
NCBI-ProteinID: XP_013703565
LinkDB
Position
A6:complement(22833309..22836541)
AA seq 354 aa
MLWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG
ASAEKVKVENRARKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR
CLNVRINAPSQEEIVKVLEFVAKKESLQLPHGFAVRIAEKSNRSLRRAILSLETCRVQNY
PFTDNQVISPMDWEEYVAEISTDMLREQSPKSLFQVRGKVYELLVNCIPPEVLLKRLLHE
LLRKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtcgacaagtataggcctaaatcgctcgacaaggtcatcgttcatgaagat
atcgctcaaaatctcaagaaattggtaacggagcaagattgtccgcatttgctcttctat
gggccgtcaggttcgggtaagaaaaccctaatcatggcgcttctcaagcagatttatggt
gccagtgccgagaaggtgaaagtggagaatagggcaaggaaagttgatgctgggagtaga
actattgatctggagctcacaacattgtcaagcaccaaccatgtggaacttactccaagt
gatgcaggttttcaggacagatacatcgttcaagagatcattaaagaaatggccaagaac
agaccaattgacaccaaaggaaagaagggatataaggtgttggtactaaatgaagttgac
aagctttcacgagaagcacaacattctctgcggagaacaatggagaaatatagctcatct
tgccgtctcatcttatgctgtaacagttcttcaaaggttacagaagccatcaagtctcgt
tgtctcaatgtgcggataaatgcaccttcgcaggaagagatagtgaaagtgttggagttc
gttgcaaagaaagaaagcctgcaactaccccacggttttgctgttcgtattgccgagaaa
tcaaatcgcagtcttagaagagctattctgtcacttgagacttgtcgtgtccaaaactat
ccgttcacagataaccaagtgatatctcctatggattgggaagagtatgttgctgaaata
tcaactgacatgctgagggaacagagccctaaaagtttgtttcaggtgcgcgggaaggta
tacgagctgctggttaattgcattccaccagaagtcttactgaagaggcttcttcatgaa
ttactgaggaaactggactcagagctgaagcttgaagtctgccactgggccgcatattat
gaacatcggatgaggttaggtcagaaagccatatttcacatagaagcatttgtggccaag
tttatgagcatatacaagaacttcctcatctcaacatttgggtag

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