Brassica napus (rape): 106408684
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Entry
106408684 CDS
T04128
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106408684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106408684
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106408684
Complex C
U5 SnRNP specific factors
106408684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
KapB
Motif
Other DBs
NCBI-GeneID:
106408684
NCBI-ProteinID:
XP_022556556
LinkDB
All DBs
Position
C4:6596606..6606404
Genome browser
AA seq
2344 aa
AA seq
DB search
MWSNNDAMPLAPPGTGGSTMPPPCNPTPTLEEKSRRWTQLNSKRYGDNKRRFGHVETQKE
DMPPEHVRKIIKDHGDMSSKKFTHDKRVYLGALKFVPHAVFKLLENMPMPWEQVRDVKVL
YHVTGAITFVNEIPLVVEPIYMAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYA
DNLLDVEPLEAIQMELDEEEDSAVYTWFYDHKPLVKTKLINGPSYKRWNLSLPIMATLHR
LAGQLLSDNLIDRNYFYLFDKESFFTAKALNMCIPGGPKFEPLYRDMERGDEDWNEFNDI
TKLIIRSPLRTEYRIAFPHLYNNRPRKVKLGVYHSPMVMYVKTEDPDLPAFYYDPLIHPI
SSNTNKERRKRKFYDDDGDDEDEDEDDDFTLPEGVEPLLKDTKLYTDTTSAGISLLFAPR
PFNMRSGRTRRSEDIPLVSEWFKEHCPQSYPVKVRVSYQKLLKCYVLNGLHSRPPKSHKK
KHLFRSLAATKFFQSTELDWVEAGLQVCRQGHNMLNLLIHRKGLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLGRQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIRKNKAKTI
LQHLSEAWRCWKANIAWKVPGLPVPVENMILRYVKSKADWWTNVAHYNRERIRRGATVDK
TVCKKNLGRLTRLWLKAEQERQHNYLKDGPYVTSEEAVSIHRTTFHWLESRMFSPIPFPP
LSYKHDTKILILALERLKESYGGAVRLNQQQREELGLIEQAYDNPHEALSRIKRLLLTQR
NMKEVGIQFMDLYSYLIPVYEIDPLEKITDAYLDQYLWYEGDKRGLFPNWIKPADSEPPP
LLVYKWCQGVNNLQGVWDTSDGQCVVMLQTKFEKLFEKIDITMLNRLLRLILDHNLADYM
CAKNNVLLAYKDMSHTNSHGLIRGLQFASFVVQFYGLSLDLVLLGLTRATEIAGPPQTPN
EFMTFWDTKVETCHPIRIYARYIDRVHIMFKFTHQEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWGIKNRLPRSITTLEWENGFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQSNTKDGVWNLQNEQTKERTAAAFLRVDDEHMKAFENRVRQILMSS
GSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRF
PPVVFYAPKELGGLGMLSMGHILIPQSDLKHSKQTDVGVTHFRSGMSHEEDQLIPNLYRY
IQPWESEFIDSQRVWAEYALKRQEAQVQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLA
YDKGWRVRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFK
GTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYLGF
QVQLDLTGVFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDHELEALEIETVQK
ETIHPRKSYKMNSSCADVLLFASGKWPMSKPSLLAESKDVFDQKASNKYWIDVQLRWGDY
DSHDIERYTRAKFMDYTADSMSIYPSPTGVVIGIDLAYNLHSAFGNWFPGSKPLVTQAMN
KIMKANPALHALRDRIKKGLQLYSSAPTEPYLSSQNYGEIFNNQIKWFVDDTNVYRVTIH
KTFEGNLTTKPINGAVFVFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRS
LPVEEQPKQIIVTRKGMLDPLEVHLLDFPNVVIKGSELQLPFQACLKIEMFGDMILKATE
PKMVLFNIYDDWLKSVSSYTCFSRLILILRALHVNNEKAKMLLRPDKSVVTEPHHIWPSL
TDEQWMKVEVALRDLILSDYAKKNNVSTSALTQSEMRDIILGADITPPSQQRQQIAEIEK
QASQAIAVTTKTRNVHGDELIVSTVTPYEQAAFSSKTDWRVRAISATNLYLRVNHIYVNS
DNINESGYTYIMPKNLLKRFICIADLRTQIAGYLYGISPPDNPRVKEIRCVVMVPQRGSS
QAVHLPSSLPENDLLNGLEPLGWLHTQPNELPELSPQDVVSHSRILEKNKKQWDVDKCIV
MTCSFTPGSCSLTAYKLTQSGYEWGRDNQDAGGRSDPRGYVPTHYEKVQMLLSDRFLGFY
MVPENGSWNYNFMGTKHAVDMKYSVRLGYPKEYFDVEHRPTHFLEFSSMEDVEMAEGDRE
DIFG
NT seq
7035 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcaacaacgatgctatgcccttagcccctcctggcaccggtggctccacaatg
ccgccaccttgtaatccgactcctactctcgaagagaagtctcgtagatggacgcagcta
aactcgaaacgctacggagataacaagaggaggttcggacacgtggagactcaaaaggag
gacatgccccctgagcacgtcaggaagatcatcaaggaccacggcgacatgtcatcgaag
aaattcactcacgacaaacgcgtatacctaggagcactcaagttcgtccctcacgccgtc
ttcaagcttcttgagaacatgccgatgccctgggagcaggtccgtgacgtgaaggttctg
taccacgtcaccggagccatcacgttcgtgaacgagatcccgttggtcgtggagcctatc
tacatggctcagtggggcactatgtggatcatgatgcggagggagaagagggaccgtcgc
cactttaaaagaatgaggtttcctccgtttgatgacgaggagcctcctcttgactacgcg
gataacttgcttgacgtggagcctctcgaggcgattcagatggagcttgacgaggaggag
gattcagctgtgtacacttggttttacgaccataagccgttggtgaagaccaaactcatt
aacggtcctagctacaagaggtggaatctctcgcttccgatcatggcgacccttcacagg
cttgcgggacagctgctgtctgataatttaatcgatcggaactacttctacttgtttgac
aaggaatctttcttcacagcgaaggctttgaacatgtgcatacccggcggtcctaagttt
gagcctttgtaccgagacatggagagaggggatgaggattggaacgagtttaatgacatc
accaagcttatcattcgctctcctttgagaactgaatacagaatagcttttcctcatttg
tataataataggccgaggaaggtgaaactaggcgtgtatcacagccctatggttatgtac
gtaaagaccgaggatcctgatcttcctgctttttattacgatccgttgattcacccaata
agcagcaatactaataaagaaaggcggaaaaggaagttttatgatgatgatggtgatgat
gaggatgaagatgaagatgatgattttaccttacctgaaggagtagagcctttgctaaaa
gacacaaagctctataccgacactacatctgctggaatctctttgttgtttgcgccacgg
cctttcaatatgaggtctgggaggacgcggcggtccgaagatatcccactggtgtcagag
tggttcaaggagcactgtcctcagtcttatcctgttaaagttcgtgtcagttaccaaaag
cttttgaaatgctacgtgctgaacggtctgcacagtagaccacctaagtctcataagaag
aagcatttattccgctccctcgcggcgacaaagtttttccaaagcaccgaactggactgg
gttgaagcgggtctgcaagtctgccggcaagggcataacatgctgaatctgctgattcac
cgcaagggtttgaactatttgcatctcgactacaacttcaacctgaagcctgtgaagact
ttaaccaccaaagagaggaagaagtcgcgtttcgggaacgctttccatctctgccgagag
atcctccgcctgacgaaacttgtggtcgatgcaaacgtccagttccgcctcggtaacgta
gacgccttccagctggctgacgggcttcagtatatattctcccacgtcggccagctgacg
ggtatgtaccggtacaagtacagactcatgaggcagatcaggatgtgcaaggacttaaag
cacttgatatactaccgtttcaacaccggtccagtcggtaaaggaccagggtgtgggttc
tgggctcccatgtggagggtttggttgtttttcctacgaggaatagttcctcttctcgaa
cgatggctagggaaccttctcggccgtcagttcgaggggcgtcactcgaaaggagttgcg
aaaacggtcacgaagcagagagtcgaaagccatttcgatctggagcttcgagctgccgtc
atgcatgacgttctcgatgcaatgcctgaaggtatcaggaaaaacaaagcgaagacgata
ttacagcatcttagcgaggcgtggcggtgctggaaagctaatatcgcttggaaggtcccc
gggttgcccgtaccggtcgagaatatgattcttcgttatgttaagtctaaggctgattgg
tggactaacgttgctcactacaaccgtgagcgtatcagaagaggagctacagttgataag
actgtttgtaagaagaatctaggaaggttgactcgtctttggctaaaggcggagcaggag
cggcagcacaattacttgaaagatggtccgtacgttacttcggaggaagcagtgtcgatt
cacagaacgacttttcattggctggaatcgaggatgttctctccgattccgttccctcca
ctgtcgtacaagcacgacacgaagattctcatcctggccctcgagaggctgaaggaatca
tacggtggtgccgtgaggttgaaccagcagcagcgagaggagcttggtctgattgagcaa
gcttacgacaatcctcatgaagcattgtcacgtatcaaacgtcttctcctcacgcagcgt
aacatgaaagaggttggcatacagtttatggatctgtacagctacttgattccagtgtac
gagatagatcctctagagaagattacagatgcttatcttgatcagtacttgtggtacgaa
ggtgataagcgcggtttgttcccgaactggatcaagccggcagactctgagccgccaccg
cttctggtttacaagtggtgtcaaggtgtaaataacttgcaaggcgtatgggacacgagt
gatgggcagtgtgtggtgatgctccagaccaagttcgaaaagctctttgagaagatcgat
attactatgttgaacaggcttctccgtttgattcttgatcacaatctcgcagattacatg
tgcgccaagaacaacgtgcttctggcttacaaggatatgagtcataccaactcgcacggt
ctgatcaggggacttcagtttgcgtcgtttgttgttcagttttacggactgtctcttgat
ctcgtgcttctcggtttgactcgagcaactgaaatcgctggaccgccgcagacgcctaac
gagtttatgacgttttgggatacgaaagtggagacgtgtcatcccataaggatctatgct
cggtacatagacagagttcatataatgtttaaattcacccaccaagaggcacgtgatctt
atccagaggtatctcacggagcatcccgatcccaacaatgagaacatggtgggatacaac
aacaaaaagtgctggccgagagatgcgaggatgaggctgatgaaacacgatgttaatctc
ggtagaagcgtgttctggggcataaagaaccgtctgcctcggagcatcacgactttggag
tgggagaatgggtttgtctctgtctacagcaaggataatcccaaccttctcttcagcatg
tgtggatttgaagttcggatacttcccaaaatcaggatgacgcaaagcaatactaaagat
ggtgtgtggaatcttcagaatgaacagaccaaggagaggactgcggctgcttttctccgg
gtcgacgacgagcacatgaaggcgtttgagaatcgcgtgaggcagattctcatgtcgtca
ggatcaacaactttcaccaagatagtcaacaagtggaacacggctctgatcggtctcatg
acttactttcgcgaagccactgtccacacgcaagagctcttggaccttctggtcaagtgc
gagaacaaaatccagacgaggatcaagatagggctgaactcaaagatgcctagccggttt
cctcccgttgtcttctacgctccaaaggagcttggcggtcttggaatgttgtcaatgggt
catatcttgatcccacaaagcgacctcaagcacagcaagcaaacagacgttggtgtaacc
cactttagaagtgggatgagccacgaggaagatcagcttataccaaatctgtaccgttac
atccagccatgggagagcgagttcatcgattcgcagcgtgtgtgggcagagtatgctcta
aagaggcaggaagcgcaggtccagaacaggcgtcttacattagaagatcttgaagactct
tgggatagaggaatccctcgtataaacacactgttccagaaggataggcacacgctagcg
tacgataaaggctggagggtccggaccgagtttaagcagtaccaagtccttaaacaaaac
ccattctggtggacgcaccagaggcacgacgggaagctctggaacttgaacaactaccga
accgacgttatccaagctctcggaggcgtcgagggtatcctcgagcatacactcttcaag
ggaacatatttcccaacgtgggagggtcttttctgggagaaggcgtctggtttcgaggag
tcgatgaagtacaagaagctgacgaacgcgcagaggtctggtctgaaccagattccgaac
aggagattcactctctggtggtcgccgacgattaaccgggcgaatgtttacttgggtttc
caggtgcagttggacctgacgggagtgttcatgcatggaaagattcctacgctgaagata
tctttgattcagatattccgcgcccatttgtggcaaaagatccacgagagtgtagtcatg
gatctttgccaagtgctggaccatgagctggaggctttggagatagaaactgtgcagaag
gagacgattcacccgaggaagagttacaagatgaacagctcttgcgctgacgttcttcta
ttcgcttccggtaaatggccaatgtcgaaaccaagcctgctcgccgagtcgaaagacgtg
ttcgaccagaaggcgagcaacaagtactggatcgatgtgcagcttcgatggggagattac
gactcccacgatatcgagcgttacaccagggccaagtttatggactacacagcggatagc
atgtctatatatccgtctccgaccggggtggtgattgggattgatctggcgtacaacttg
cattccgcgtttggtaattggttccctggttcgaagcctcttgttactcaagcgatgaac
aagattatgaaggcgaatccggctctacacgcgttgagggataggataaagaaaggcttg
cagttgtactcgtccgctcccacggagccgtacttgtcgtctcaaaactatggggagata
ttcaataatcagattaaatggtttgtggatgataccaatgtctaccgtgtcacaattcac
aagacgttcgaggggaatctaacaactaagccgatcaacggtgcggtttttgttttcaat
ccgagaactggacagctgtttttgaaggttatccatacaagtgtttgggctggtcagaag
cgtctcggacagttagcgaagtggaaaactgctgaagaggttgctgcgcttgtgaggtct
ctccccgttgaagaacagccgaagcagatcattgttacacgtaaaggaatgctggatccg
ttagaggttcacttgctggacttccctaacgttgttatcaagggaagcgagcttcagctt
ccgttccaggcttgtctcaagattgagatgttcggcgatatgattctgaaggcgacggag
ccgaagatggttttgttcaatatctatgatgattggttgaagagtgtttcttcttatacc
tgcttttcgagacttattctgatcctacgtgcacttcatgtgaataacgagaaggctaag
atgctgttaaggccggacaagtctgttgtcactgagccgcatcacatctggccttcgctc
actgatgaacaatggatgaaggtggaggtagcactaagagatctcatcctttctgactac
gcgaagaagaacaatgtgagcacatcggctctaacgcaatcggagatgagagatattatt
ctaggagctgacatcactccaccctctcagcagaggcaacagatagctgagattgagaaa
caagccagccaggctattgcagtcacaacgaaaacgagaaacgttcacggagacgagctc
atcgtctccaccgtgaccccctacgagcaagctgcgtttagttccaagacggattggcgc
gtgcgtgcaatatcagcaaccaacctctacctaagagtcaaccacatctacgtgaactcg
gacaacataaacgagtccggatacacatacatcatgccgaagaacctcctgaagaggttc
atatgcatagcggatctccgcacccaaatcgctggatacttgtacggtatcagccccccg
gataatcctcgagtgaaggagattcgttgcgttgtgatggtgccgcagcggggaagctcc
caggctgttcacctgccttcgtctctccctgagaatgatttgttaaacggtctcgagccc
ttggggtggttgcacacgcagcctaacgagctcccggagctctcgccacaggatgttgtc
tctcattctcggattctggagaagaacaagaagcagtgggatgttgacaaatgcatcgtc
atgacgtgtagttttactccgggttcgtgctctttgacggcttataagctgactcaaagt
ggatatgaatggggacgagacaaccaggacgcaggcgggagaagcgatcctcggggttat
gttcccacgcattatgagaaggttcagatgctgttgagtgaccgtttcctcgggttttat
atggttcctgaaaacggatcgtggaactataattttatgggaacgaagcatgcggtggat
atgaagtacagcgtcagacttggatacccaaaggagtactttgacgtggagcatcgacct
actcatttcttggagtttagtagcatggaggatgttgaaatggccgagggagatcgagag
gacatctttggttga
DBGET
integrated database retrieval system
